Last updated on 2019-11-26 00:51:52 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.2.2 | 8.79 | 205.45 | 214.24 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.2.2 | 7.16 | 160.02 | 167.18 | OK | |
| r-devel-linux-x86_64-fedora-clang | 1.2.2 | 253.33 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 1.2.2 | 250.59 | OK | |||
| r-devel-windows-ix86+x86_64 | 1.2.2 | 24.00 | 350.00 | 374.00 | OK | |
| r-devel-windows-ix86+x86_64-gcc8 | 1.2.2 | 19.00 | 258.00 | 277.00 | OK | |
| r-patched-linux-x86_64 | 1.2.2 | 8.08 | 187.78 | 195.86 | OK | |
| r-patched-solaris-x86 | 1.2.2 | 345.40 | OK | |||
| r-release-linux-x86_64 | 1.2.2 | 7.76 | 191.11 | 198.87 | OK | |
| r-release-windows-ix86+x86_64 | 1.2.2 | 26.00 | 333.00 | 359.00 | OK | |
| r-release-osx-x86_64 | 1.2.2 | ERROR | ||||
| r-oldrel-windows-ix86+x86_64 | 1.2.2 | 11.00 | 339.00 | 350.00 | OK | |
| r-oldrel-osx-x86_64 | 1.2.2 | ERROR |
Version: 1.2.2
Check: tests
Result: ERROR
Running ‘testthat.R’ [6s/5s]
Running the tests in ‘tests/testthat.R’ failed.
Last 13 lines of output:
> test_check("genBaRcode")
── 1. Error: (unknown) (@test_raw_data_functions.R#3) ─────────────────────────
package 'GenomeInfoDb' could not be loaded
Backtrace:
1. base::library(ShortRead)
2. base::.getRequiredPackages2(pkgInfo, quietly = quietly)
3. base::library(...)
4. base::.getRequiredPackages2(pkgInfo, quietly = quietly)
══ testthat results ═══════════════════════════════════════════════════════════
[ OK: 17 | SKIPPED: 0 | WARNINGS: 4 | FAILED: 1 ]
1. Error: (unknown) (@test_raw_data_functions.R#3)
Error: testthat unit tests failed
Execution halted
Flavor: r-release-osx-x86_64
Version: 1.2.2
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
...
--- re-building ‘genBaRcode_GUI_Vignette.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
--- finished re-building ‘genBaRcode_GUI_Vignette.Rmd’
--- re-building ‘genBaRcode_Vignette.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
Quitting from lines 155-176 (genBaRcode_Vignette.Rmd)
Error: processing vignette 'genBaRcode_Vignette.Rmd' failed with diagnostics:
there is no package called 'GenomeInfoDbData'
--- failed re-building ‘genBaRcode_Vignette.Rmd’
SUMMARY: processing the following file failed:
‘genBaRcode_Vignette.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-release-osx-x86_64
Version: 1.2.2
Check: package dependencies
Result: ERROR
Package required but not available: ‘ShortRead’
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Flavor: r-oldrel-osx-x86_64