Last updated on 2019-11-26 00:51:54 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.3.0 | 57.47 | 111.81 | 169.28 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.3.0 | 44.29 | 85.88 | 130.17 | OK | |
| r-devel-linux-x86_64-fedora-clang | 1.3.0 | 204.95 | NOTE | |||
| r-devel-linux-x86_64-fedora-gcc | 1.3.0 | 201.40 | OK | |||
| r-devel-windows-ix86+x86_64 | 1.3.0 | 146.00 | 233.00 | 379.00 | NOTE | |
| r-devel-windows-ix86+x86_64-gcc8 | 1.3.0 | 123.00 | 181.00 | 304.00 | NOTE | |
| r-patched-linux-x86_64 | 1.3.0 | 48.03 | 107.50 | 155.53 | OK | |
| r-patched-solaris-x86 | 1.3.0 | 295.10 | ERROR | |||
| r-release-linux-x86_64 | 1.3.0 | 50.42 | 109.15 | 159.57 | OK | |
| r-release-windows-ix86+x86_64 | 1.3.0 | 140.00 | 167.00 | 307.00 | NOTE | |
| r-release-osx-x86_64 | 1.3.0 | NOTE | ||||
| r-oldrel-windows-ix86+x86_64 | 1.3.0 | 86.00 | 217.00 | 303.00 | NOTE | |
| r-oldrel-osx-x86_64 | 1.3.0 | NOTE |
Version: 1.3.0
Check: installed package size
Result: NOTE
installed size is 5.1Mb
sub-directories of 1Mb or more:
libs 1.2Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-windows-ix86+x86_64, r-devel-windows-ix86+x86_64-gcc8, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64
Version: 1.3.0
Check: examples
Result: ERROR
Running examples in ‘hdf5r-Ex.R’ failed
The error most likely occurred in:
> ### Name: H5A-class
> ### Title: Class for representing HDF5 attributes
> ### Aliases: H5A-class H5A
>
> ### ** Examples
>
> fname <- tempfile(fileext = ".h5")
> file <- H5File$new(fname, mode = "a")
Error in H5File.open(filename, mode, file_create_pl, file_access_pl) :
HDF5-API Errors:
error #000: H5F.c in H5Fcreate(): line 444: unable to create file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #001: H5Fint.c in H5F__create(): line 1364: unable to open file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #002: H5Fint.c in H5F_open(): line 1615: unable to lock the file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #003: H5FD.c in H5FD_lock(): line 1640: driver lock request failed
class: HDF5
major: Virtual File Layer
minor: Can't update object
error #004: H5FDsec2.c in H5FD_sec2_lock(): line 941: unable to lock file, errno = 14, error message = 'Bad address'
class: HDF5
major: File accessibilty
minor: Bad file ID accessed
Calls: <Anonymous> -> <Anonymous> -> H5File.open
Execution halted
Flavor: r-patched-solaris-x86
Version: 1.3.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [33s/36s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(hdf5r)
>
> test_check("hdf5r")
── 1. Error: Dataset with more than 2^31 rows (@test-64bit_support.R#40) ──────
HDF5-API H5F.c in H5Fcreate(): line 444: unable to create file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #001: H5Fint.c in H5F__create(): line 1364: unable to open file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #002: H5Fint.c in H5F_open(): line 1615: unable to lock the file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #003: H5FD.c in H5FD_lock(): line 1640: driver lock request failed
class: HDF5
major: Virtual File Layer
minor: Can't update object
error #004: H5FDsec2.c in H5FD_sec2_lock(): line 941: unable to lock file, errno = 14, error message = 'Bad address'
class: HDF5
major: File accessibilty
minor: Bad file ID accessed
Backtrace:
1. H5File$new(test_file, mode = "w")
2. .subset2(public_bind_env, "initialize")(...)
3. hdf5r:::H5File.open(filename, mode, file_create_pl, file_access_pl)
── 2. Error: Datatype conversion with 64bit (@test-64bit_support.R#75) ────────
HDF5-API H5T.c in H5Tget_class(): line 1876: not a datatype
class: HDF5
major: Invalid arguments to routine
minor: Inappropriate type
Backtrace:
1. hdf5r:::convertRoundTrip(dbl_vec, dtype_uint64, flags = h5const$H5TOR_CONV_NONE)
2. hdf5r:::H5ToR_Pre(dtype, nelem)
── 3. Error: Convert H5T_FLOAT works (@test-convert.R#33) ─────────────────────
HDF5-API H5T.c in H5Tget_class(): line 1876: not a datatype
class: HDF5
major: Invalid arguments to routine
minor: Inappropriate type
Backtrace:
1. hdf5r:::convertRoundTrip(Robj, dtype_double)
2. hdf5r:::H5ToR_Pre(dtype, nelem)
── 4. Error: Convert H5T_INTEGER works (@test-convert.R#77) ───────────────────
HDF5-API H5T.c in H5Tget_class(): line 1876: not a datatype
class: HDF5
major: Invalid arguments to routine
minor: Inappropriate type
Backtrace:
1. hdf5r:::convertRoundTrip(robj_double, dtype_uint64)
2. hdf5r:::H5ToR_Pre(dtype, nelem)
── 5. Error: Convert H5T_ENUM works (@test-convert.R#131) ─────────────────────
HDF5-API H5T.c in H5Tget_class(): line 1876: not a datatype
class: HDF5
major: Invalid arguments to routine
minor: Inappropriate type
Backtrace:
1. hdf5r:::convertRoundTrip(obj_logical, enum_logical)
2. hdf5r:::H5ToR_Pre(dtype, nelem)
── 6. Error: Convert H5T_STRING works (@test-convert.R#171) ───────────────────
HDF5-API H5T.c in H5Tget_class(): line 1876: not a datatype
class: HDF5
major: Invalid arguments to routine
minor: Inappropriate type
Backtrace:
1. hdf5r:::convertRoundTrip(string.utf8, dtype_string_unknown)
2. hdf5r:::H5ToR_Pre(dtype, nelem)
── 7. Error: Convert R_Complex works (@test-convert.R#222) ────────────────────
HDF5-API H5T.c in H5Tget_class(): line 1876: not a datatype
class: HDF5
major: Invalid arguments to routine
minor: Inappropriate type
Backtrace:
1. hdf5r:::convertRoundTrip(r_cmplx, dtype_complex)
2. hdf5r:::H5ToR_Pre(dtype, nelem)
── 8. Error: Convert H5T_COMPOUND works (@test-convert.R#235) ─────────────────
HDF5-API H5T.c in H5Tget_class(): line 1876: not a datatype
class: HDF5
major: Invalid arguments to routine
minor: Inappropriate type
Backtrace:
1. hdf5r:::convertRoundTrip(test_frame, dtype_cpd)
2. hdf5r:::H5ToR_Pre(dtype, nelem)
── 9. Error: Convert H5T_ARRAY works (@test-convert.R#246) ────────────────────
HDF5-API H5T.c in H5Tget_class(): line 1876: not a datatype
class: HDF5
major: Invalid arguments to routine
minor: Inappropriate type
Backtrace:
1. hdf5r:::convertRoundTrip(test_data, dtype_array, nelem = 20)
2. hdf5r:::H5ToR_Pre(dtype, nelem)
── 10. Error: Convert H5T_VLEN works (@test-convert.R#256) ────────────────────
HDF5-API H5T.c in H5Tget_class(): line 1876: not a datatype
class: HDF5
major: Invalid arguments to routine
minor: Inappropriate type
Backtrace:
1. hdf5r:::convertRoundTrip(test_data, dtype_vlen)
2. hdf5r:::H5ToR_Pre(dtype, nelem)
── 11. Error: Logical with and without NA (@test-convert.R#379) ───────────────
HDF5-API H5T.c in H5Tget_class(): line 1876: not a datatype
class: HDF5
major: Invalid arguments to routine
minor: Inappropriate type
Backtrace:
1. hdf5r:::convertRoundTrip(logical_noNA, dtype_logical_noNA)
2. hdf5r:::H5ToR_Pre(dtype, nelem)
── 12. Error: Basic dataset function (@test-h5a.R#29) ─────────────────────────
HDF5-API H5F.c in H5Fcreate(): line 444: unable to create file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #001: H5Fint.c in H5F__create(): line 1364: unable to open file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #002: H5Fint.c in H5F_open(): line 1615: unable to lock the file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #003: H5FD.c in H5FD_lock(): line 1640: driver lock request failed
class: HDF5
major: Virtual File Layer
minor: Can't update object
error #004: H5FDsec2.c in H5FD_sec2_lock(): line 941: unable to lock file, errno = 14, error message = 'Bad address'
class: HDF5
major: File accessibilty
minor: Bad file ID accessed
Backtrace:
1. H5File$new(test_file, mode = "w")
2. .subset2(public_bind_env, "initialize")(...)
3. hdf5r:::H5File.open(filename, mode, file_create_pl, file_access_pl)
── 13. Error: Creating attributes of different types (@test-h5a.R#112) ────────
HDF5-API H5F.c in H5Fcreate(): line 444: unable to create file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #001: H5Fint.c in H5F__create(): line 1364: unable to open file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #002: H5Fint.c in H5F_open(): line 1615: unable to lock the file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #003: H5FD.c in H5FD_lock(): line 1640: driver lock request failed
class: HDF5
major: Virtual File Layer
minor: Can't update object
error #004: H5FDsec2.c in H5FD_sec2_lock(): line 941: unable to lock file, errno = 14, error message = 'Bad address'
class: HDF5
major: File accessibilty
minor: Bad file ID accessed
Backtrace:
1. H5File$new(test_file, mode = "w")
2. .subset2(public_bind_env, "initialize")(...)
3. hdf5r:::H5File.open(filename, mode, file_create_pl, file_access_pl)
── 14. Error: Basic dataset function (@test-h5d.R#31) ─────────────────────────
HDF5-API H5F.c in H5Fcreate(): line 444: unable to create file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #001: H5Fint.c in H5F__create(): line 1364: unable to open file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #002: H5Fint.c in H5F_open(): line 1615: unable to lock the file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #003: H5FD.c in H5FD_lock(): line 1640: driver lock request failed
class: HDF5
major: Virtual File Layer
minor: Can't update object
error #004: H5FDsec2.c in H5FD_sec2_lock(): line 941: unable to lock file, errno = 14, error message = 'Bad address'
class: HDF5
major: File accessibilty
minor: Bad file ID accessed
Backtrace:
1. H5File$new(test_file, mode = "w")
2. .subset2(public_bind_env, "initialize")(...)
3. hdf5r:::H5File.open(filename, mode, file_create_pl, file_access_pl)
── 15. Error: Creating datasets of different types (@test-h5d.R#94) ───────────
HDF5-API H5F.c in H5Fcreate(): line 444: unable to create file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #001: H5Fint.c in H5F__create(): line 1364: unable to open file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #002: H5Fint.c in H5F_open(): line 1615: unable to lock the file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #003: H5FD.c in H5FD_lock(): line 1640: driver lock request failed
class: HDF5
major: Virtual File Layer
minor: Can't update object
error #004: H5FDsec2.c in H5FD_sec2_lock(): line 941: unable to lock file, errno = 14, error message = 'Bad address'
class: HDF5
major: File accessibilty
minor: Bad file ID accessed
Backtrace:
1. H5File$new(test_file, mode = "w")
2. .subset2(public_bind_env, "initialize")(...)
3. hdf5r:::H5File.open(filename, mode, file_create_pl, file_access_pl)
── 16. Error: Chunking failures as intended (@test-h5d.R#185) ─────────────────
HDF5-API H5F.c in H5Fcreate(): line 444: unable to create file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #001: H5Fint.c in H5F__create(): line 1364: unable to open file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #002: H5Fint.c in H5F_open(): line 1615: unable to lock the file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #003: H5FD.c in H5FD_lock(): line 1640: driver lock request failed
class: HDF5
major: Virtual File Layer
minor: Can't update object
error #004: H5FDsec2.c in H5FD_sec2_lock(): line 941: unable to lock file, errno = 14, error message = 'Bad address'
class: HDF5
major: File accessibilty
minor: Bad file ID accessed
Backtrace:
1. H5File$new(test_file, mode = "w")
2. .subset2(public_bind_env, "initialize")(...)
3. hdf5r:::H5File.open(filename, mode, file_create_pl, file_access_pl)
── 17. Error: HDF5 error message forwarding (@test-h5error.R#24) ──────────────
HDF5-API H5F.c in H5Fcreate(): line 444: unable to create file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #001: H5Fint.c in H5F__create(): line 1364: unable to open file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #002: H5Fint.c in H5F_open(): line 1615: unable to lock the file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #003: H5FD.c in H5FD_lock(): line 1640: driver lock request failed
class: HDF5
major: Virtual File Layer
minor: Can't update object
error #004: H5FDsec2.c in H5FD_sec2_lock(): line 941: unable to lock file, errno = 14, error message = 'Bad address'
class: HDF5
major: File accessibilty
minor: Bad file ID accessed
Backtrace:
1. H5File$new(test_file, mode = "w")
2. .subset2(public_bind_env, "initialize")(...)
3. hdf5r:::H5File.open(filename, mode, file_create_pl, file_access_pl)
── 18. Error: File creation (@test-h5file_h5group.R#23) ───────────────────────
HDF5-API H5F.c in H5Fcreate(): line 444: unable to create file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #001: H5Fint.c in H5F__create(): line 1364: unable to open file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #002: H5Fint.c in H5F_open(): line 1615: unable to lock the file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #003: H5FD.c in H5FD_lock(): line 1640: driver lock request failed
class: HDF5
major: Virtual File Layer
minor: Can't update object
error #004: H5FDsec2.c in H5FD_sec2_lock(): line 941: unable to lock file, errno = 14, error message = 'Bad address'
class: HDF5
major: File accessibilty
minor: Bad file ID accessed
Backtrace:
1. H5File$new(test_file, mode = "w")
2. .subset2(public_bind_env, "initialize")(...)
3. hdf5r:::H5File.open(filename, mode, file_create_pl, file_access_pl)
── 19. Error: File mounting (@test-h5file_h5group.R#123) ──────────────────────
HDF5-API H5F.c in H5Fcreate(): line 444: unable to create file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #001: H5Fint.c in H5F__create(): line 1364: unable to open file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #002: H5Fint.c in H5F_open(): line 1615: unable to lock the file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #003: H5FD.c in H5FD_lock(): line 1640: driver lock request failed
class: HDF5
major: Virtual File Layer
minor: Can't update object
error #004: H5FDsec2.c in H5FD_sec2_lock(): line 941: unable to lock file, errno = 14, error message = 'Bad address'
class: HDF5
major: File accessibilty
minor: Bad file ID accessed
Backtrace:
1. H5File$new(test_file, mode = "w")
2. .subset2(public_bind_env, "initialize")(...)
3. hdf5r:::H5File.open(filename, mode, file_create_pl, file_access_pl)
── 20. Error: H5P_DATASET_CREATE works (@test-h5p.R#80) ───────────────────────
HDF5-API H5T.c in H5Tget_class(): line 1876: not a datatype
class: HDF5
major: Invalid arguments to routine
minor: Inappropriate type
Backtrace:
1. testthat::expect_equal(h5p_obj$get_fill_value(dtype_int), 1)
4. h5p_obj$get_fill_value(dtype_int)
5. hdf5r:::H5ToR_Pre(dtype, 1)
── 21. Failure: native datatypes (@test-h5t.R#120) ────────────────────────────
cpd_test_native_c$equal(cpd_native_c) isn't true.
── 22. Failure: native datatypes (@test-h5t.R#121) ────────────────────────────
cpd_test_native_c$describe() not equal to cpd_native_c$describe().
Component "size": Mean relative difference: 0.1428571
── 23. Error: Committing a datatype (@test-h5t.R#128) ─────────────────────────
HDF5-API H5F.c in H5Fcreate(): line 444: unable to create file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #001: H5Fint.c in H5F__create(): line 1364: unable to open file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #002: H5Fint.c in H5F_open(): line 1615: unable to lock the file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #003: H5FD.c in H5FD_lock(): line 1640: driver lock request failed
class: HDF5
major: Virtual File Layer
minor: Can't update object
error #004: H5FDsec2.c in H5FD_sec2_lock(): line 941: unable to lock file, errno = 14, error message = 'Bad address'
class: HDF5
major: File accessibilty
minor: Bad file ID accessed
Backtrace:
1. H5File$new(test_file, mode = "w")
2. .subset2(public_bind_env, "initialize")(...)
3. hdf5r:::H5File.open(filename, mode, file_create_pl, file_access_pl)
── 24. Error: Names and [[ (@test-high_level_UI.R#23) ─────────────────────────
HDF5-API H5F.c in H5Fcreate(): line 444: unable to create file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #001: H5Fint.c in H5F__create(): line 1364: unable to open file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #002: H5Fint.c in H5F_open(): line 1615: unable to lock the file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #003: H5FD.c in H5FD_lock(): line 1640: driver lock request failed
class: HDF5
major: Virtual File Layer
minor: Can't update object
error #004: H5FDsec2.c in H5FD_sec2_lock(): line 941: unable to lock file, errno = 14, error message = 'Bad address'
class: HDF5
major: File accessibilty
minor: Bad file ID accessed
Backtrace:
1. H5File$new(test_file, mode = "w")
2. .subset2(public_bind_env, "initialize")(...)
3. hdf5r:::H5File.open(filename, mode, file_create_pl, file_access_pl)
── 25. Error: subset_h5.H5D (@test-high_level_UI.R#247) ───────────────────────
HDF5-API H5F.c in H5Fcreate(): line 444: unable to create file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #001: H5Fint.c in H5F__create(): line 1364: unable to open file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #002: H5Fint.c in H5F_open(): line 1615: unable to lock the file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #003: H5FD.c in H5FD_lock(): line 1640: driver lock request failed
class: HDF5
major: Virtual File Layer
minor: Can't update object
error #004: H5FDsec2.c in H5FD_sec2_lock(): line 941: unable to lock file, errno = 14, error message = 'Bad address'
class: HDF5
major: File accessibilty
minor: Bad file ID accessed
Backtrace:
1. H5File$new(test_file, mode = "w")
2. .subset2(public_bind_env, "initialize")(...)
3. hdf5r:::H5File.open(filename, mode, file_create_pl, file_access_pl)
── 26. Error: attributes (@test-high_level_UI.R#334) ──────────────────────────
HDF5-API H5F.c in H5Fcreate(): line 444: unable to create file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #001: H5Fint.c in H5F__create(): line 1364: unable to open file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #002: H5Fint.c in H5F_open(): line 1615: unable to lock the file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #003: H5FD.c in H5FD_lock(): line 1640: driver lock request failed
class: HDF5
major: Virtual File Layer
minor: Can't update object
error #004: H5FDsec2.c in H5FD_sec2_lock(): line 941: unable to lock file, errno = 14, error message = 'Bad address'
class: HDF5
major: File accessibilty
minor: Bad file ID accessed
Backtrace:
1. H5File$new(test_file, mode = "w")
2. .subset2(public_bind_env, "initialize")(...)
3. hdf5r:::H5File.open(filename, mode, file_create_pl, file_access_pl)
── 27. Error: Subsetting dimensions, drop and write (@test-high_level_UI.R#362)
HDF5-API H5F.c in H5Fcreate(): line 444: unable to create file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #001: H5Fint.c in H5F__create(): line 1364: unable to open file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #002: H5Fint.c in H5F_open(): line 1615: unable to lock the file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #003: H5FD.c in H5FD_lock(): line 1640: driver lock request failed
class: HDF5
major: Virtual File Layer
minor: Can't update object
error #004: H5FDsec2.c in H5FD_sec2_lock(): line 941: unable to lock file, errno = 14, error message = 'Bad address'
class: HDF5
major: File accessibilty
minor: Bad file ID accessed
Backtrace:
1. H5File$new(test_file, mode = "w")
2. .subset2(public_bind_env, "initialize")(...)
3. hdf5r:::H5File.open(filename, mode, file_create_pl, file_access_pl)
── 28. Error: Check if index is ok before expand (@test-high_level_UI.R#501) ──
HDF5-API H5F.c in H5Fcreate(): line 444: unable to create file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #001: H5Fint.c in H5F__create(): line 1364: unable to open file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #002: H5Fint.c in H5F_open(): line 1615: unable to lock the file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #003: H5FD.c in H5FD_lock(): line 1640: driver lock request failed
class: HDF5
major: Virtual File Layer
minor: Can't update object
error #004: H5FDsec2.c in H5FD_sec2_lock(): line 941: unable to lock file, errno = 14, error message = 'Bad address'
class: HDF5
major: File accessibilty
minor: Bad file ID accessed
Backtrace:
1. H5File$new(test_file, mode = "w")
2. .subset2(public_bind_env, "initialize")(...)
3. hdf5r:::H5File.open(filename, mode, file_create_pl, file_access_pl)
── 29. Error: Link functions (@test-links.R#23) ───────────────────────────────
HDF5-API H5F.c in H5Fcreate(): line 444: unable to create file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #001: H5Fint.c in H5F__create(): line 1364: unable to open file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #002: H5Fint.c in H5F_open(): line 1615: unable to lock the file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #003: H5FD.c in H5FD_lock(): line 1640: driver lock request failed
class: HDF5
major: Virtual File Layer
minor: Can't update object
error #004: H5FDsec2.c in H5FD_sec2_lock(): line 941: unable to lock file, errno = 14, error message = 'Bad address'
class: HDF5
major: File accessibilty
minor: Bad file ID accessed
Backtrace:
1. H5File$new(test_file, mode = "w")
2. .subset2(public_bind_env, "initialize")(...)
3. hdf5r:::H5File.open(filename, mode, file_create_pl, file_access_pl)
── 30. Error: Print functions work as expected (@test-print.R#16) ─────────────
HDF5-API H5F.c in H5Fcreate(): line 444: unable to create file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #001: H5Fint.c in H5F__create(): line 1364: unable to open file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #002: H5Fint.c in H5F_open(): line 1615: unable to lock the file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #003: H5FD.c in H5FD_lock(): line 1640: driver lock request failed
class: HDF5
major: Virtual File Layer
minor: Can't update object
error #004: H5FDsec2.c in H5FD_sec2_lock(): line 941: unable to lock file, errno = 14, error message = 'Bad address'
class: HDF5
major: File accessibilty
minor: Bad file ID accessed
Backtrace:
1. H5File$new(test_file, mode = "w")
2. .subset2(public_bind_env, "initialize")(...)
3. hdf5r:::H5File.open(filename, mode, file_create_pl, file_access_pl)
── 31. Error: Subsetting reference vector (@test-reference.R#68) ──────────────
HDF5-API H5F.c in H5Fcreate(): line 444: unable to create file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #001: H5Fint.c in H5F__create(): line 1364: unable to open file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #002: H5Fint.c in H5F_open(): line 1615: unable to lock the file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #003: H5FD.c in H5FD_lock(): line 1640: driver lock request failed
class: HDF5
major: Virtual File Layer
minor: Can't update object
error #004: H5FDsec2.c in H5FD_sec2_lock(): line 941: unable to lock file, errno = 14, error message = 'Bad address'
class: HDF5
major: File accessibilty
minor: Bad file ID accessed
Backtrace:
1. H5File$new(test_file, mode = "w")
2. .subset2(public_bind_env, "initialize")(...)
3. hdf5r:::H5File.open(filename, mode, file_create_pl, file_access_pl)
── 32. Error: UI functions for reference vector (@test-reference.R#175) ───────
HDF5-API H5F.c in H5Fcreate(): line 444: unable to create file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #001: H5Fint.c in H5F__create(): line 1364: unable to open file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #002: H5Fint.c in H5F_open(): line 1615: unable to lock the file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #003: H5FD.c in H5FD_lock(): line 1640: driver lock request failed
class: HDF5
major: Virtual File Layer
minor: Can't update object
error #004: H5FDsec2.c in H5FD_sec2_lock(): line 941: unable to lock file, errno = 14, error message = 'Bad address'
class: HDF5
major: File accessibilty
minor: Bad file ID accessed
Backtrace:
1. H5File$new(test_file, mode = "w")
2. .subset2(public_bind_env, "initialize")(...)
3. hdf5r:::H5File.open(filename, mode, file_create_pl, file_access_pl)
── 33. Error: Create and dereference references; save in a dataset (@test-refere
HDF5-API H5F.c in H5Fcreate(): line 444: unable to create file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #001: H5Fint.c in H5F__create(): line 1364: unable to open file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #002: H5Fint.c in H5F_open(): line 1615: unable to lock the file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #003: H5FD.c in H5FD_lock(): line 1640: driver lock request failed
class: HDF5
major: Virtual File Layer
minor: Can't update object
error #004: H5FDsec2.c in H5FD_sec2_lock(): line 941: unable to lock file, errno = 14, error message = 'Bad address'
class: HDF5
major: File accessibilty
minor: Bad file ID accessed
Backtrace:
1. H5File$new(test_file, mode = "w")
2. .subset2(public_bind_env, "initialize")(...)
3. hdf5r:::H5File.open(filename, mode, file_create_pl, file_access_pl)
── 34. Error: Attribute-Errors (@test-zzz-Attribute.R#34) ─────────────────────
HDF5-API H5F.c in H5Fcreate(): line 444: unable to create file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #001: H5Fint.c in H5F__create(): line 1364: unable to open file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #002: H5Fint.c in H5F_open(): line 1615: unable to lock the file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #003: H5FD.c in H5FD_lock(): line 1640: driver lock request failed
class: HDF5
major: Virtual File Layer
minor: Can't update object
error #004: H5FDsec2.c in H5FD_sec2_lock(): line 941: unable to lock file, errno = 14, error message = 'Bad address'
class: HDF5
major: File accessibilty
minor: Bad file ID accessed
Backtrace:
1. R6:::h5file(fname, "a")
2. .subset2(public_bind_env, "initialize")(...)
3. hdf5r:::H5File.open(filename, mode, file_create_pl, file_access_pl)
── 35. Error: Attribute-H5Type-File (@test-zzz-Attribute.R#70) ────────────────
HDF5-API H5F.c in H5Fcreate(): line 444: unable to create file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #001: H5Fint.c in H5F__create(): line 1364: unable to open file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #002: H5Fint.c in H5F_open(): line 1615: unable to lock the file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #003: H5FD.c in H5FD_lock(): line 1640: driver lock request failed
class: HDF5
major: Virtual File Layer
minor: Can't update object
error #004: H5FDsec2.c in H5FD_sec2_lock(): line 941: unable to lock file, errno = 14, error message = 'Bad address'
class: HDF5
major: File accessibilty
minor: Bad file ID accessed
Backtrace:
1. R6:::h5file(fname, "a")
2. .subset2(public_bind_env, "initialize")(...)
3. hdf5r:::H5File.open(filename, mode, file_create_pl, file_access_pl)
── 36. Error: Attribute-list-attributes (@test-zzz-Attribute.R#128) ───────────
HDF5-API H5F.c in H5Fcreate(): line 444: unable to create file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #001: H5Fint.c in H5F__create(): line 1364: unable to open file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #002: H5Fint.c in H5F_open(): line 1615: unable to lock the file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #003: H5FD.c in H5FD_lock(): line 1640: driver lock request failed
class: HDF5
major: Virtual File Layer
minor: Can't update object
error #004: H5FDsec2.c in H5FD_sec2_lock(): line 941: unable to lock file, errno = 14, error message = 'Bad address'
class: HDF5
major: File accessibilty
minor: Bad file ID accessed
Backtrace:
1. R6:::h5file(fname)
2. .subset2(public_bind_env, "initialize")(...)
3. hdf5r:::H5File.open(filename, mode, file_create_pl, file_access_pl)
── 37. Error: Bug_AttributeGroupSubset (@test-zzz-Attribute.R#169) ────────────
HDF5-API H5F.c in H5Fcreate(): line 444: unable to create file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #001: H5Fint.c in H5F__create(): line 1364: unable to open file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #002: H5Fint.c in H5F_open(): line 1615: unable to lock the file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #003: H5FD.c in H5FD_lock(): line 1640: driver lock request failed
class: HDF5
major: Virtual File Layer
minor: Can't update object
error #004: H5FDsec2.c in H5FD_sec2_lock(): line 941: unable to lock file, errno = 14, error message = 'Bad address'
class: HDF5
major: File accessibilty
minor: Bad file ID accessed
Backtrace:
1. R6:::h5file(fname)
2. .subset2(public_bind_env, "initialize")(...)
3. hdf5r:::H5File.open(filename, mode, file_create_pl, file_access_pl)
── 38. Error: Attribute-Bug-Scalar-Issue09 (@test-zzz-Attribute.R#182) ────────
HDF5-API H5F.c in H5Fopen(): line 509: unable to open file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #001: H5Fint.c in H5F__open(): line 1400: unable to open file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #002: H5Fint.c in H5F_open(): line 1615: unable to lock the file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #003: H5FD.c in H5FD_lock(): line 1640: driver lock request failed
class: HDF5
major: Virtual File Layer
minor: Can't update object
error #004: H5FDsec2.c in H5FD_sec2_lock(): line 941: unable to lock file, errno = 14, error message = 'Bad address'
class: HDF5
major: File accessibilty
minor: Bad file ID accessed
Backtrace:
1. R6:::h5file(fname, "r")
2. .subset2(public_bind_env, "initialize")(...)
3. hdf5r:::H5File.open(filename, mode, file_create_pl, file_access_pl)
── 39. Error: DataSet-Vector-NA (@test-zzz-DataSet-IO-NA.R#18) ────────────────
HDF5-API H5F.c in H5Fcreate(): line 444: unable to create file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #001: H5Fint.c in H5F__create(): line 1364: unable to open file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #002: H5Fint.c in H5F_open(): line 1615: unable to lock the file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #003: H5FD.c in H5FD_lock(): line 1640: driver lock request failed
class: HDF5
major: Virtual File Layer
minor: Can't update object
error #004: H5FDsec2.c in H5FD_sec2_lock(): line 941: unable to lock file, errno = 14, error message = 'Bad address'
class: HDF5
major: File accessibilty
minor: Bad file ID accessed
Backtrace:
1. R6:::h5file(fname, "a")
2. .subset2(public_bind_env, "initialize")(...)
3. hdf5r:::H5File.open(filename, mode, file_create_pl, file_access_pl)
── 40. Error: DataSet-Vector (@test-zzz-DataSet-IO.R#14) ──────────────────────
HDF5-API H5F.c in H5Fcreate(): line 444: unable to create file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #001: H5Fint.c in H5F__create(): line 1364: unable to open file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #002: H5Fint.c in H5F_open(): line 1615: unable to lock the file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #003: H5FD.c in H5FD_lock(): line 1640: driver lock request failed
class: HDF5
major: Virtual File Layer
minor: Can't update object
error #004: H5FDsec2.c in H5FD_sec2_lock(): line 941: unable to lock file, errno = 14, error message = 'Bad address'
class: HDF5
major: File accessibilty
minor: Bad file ID accessed
Backtrace:
1. R6:::h5file(fname, "a")
2. .subset2(public_bind_env, "initialize")(...)
3. hdf5r:::H5File.open(filename, mode, file_create_pl, file_access_pl)
── 41. Error: DataSet-Vector-boundaries (@test-zzz-DataSet-IO.R#71) ───────────
HDF5-API H5F.c in H5Fcreate(): line 444: unable to create file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #001: H5Fint.c in H5F__create(): line 1364: unable to open file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #002: H5Fint.c in H5F_open(): line 1615: unable to lock the file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #003: H5FD.c in H5FD_lock(): line 1640: driver lock request failed
class: HDF5
major: Virtual File Layer
minor: Can't update object
error #004: H5FDsec2.c in H5FD_sec2_lock(): line 941: unable to lock file, errno = 14, error message = 'Bad address'
class: HDF5
major: File accessibilty
minor: Bad file ID accessed
Backtrace:
1. R6:::h5file(fname, "a")
2. .subset2(public_bind_env, "initialize")(...)
3. hdf5r:::H5File.open(filename, mode, file_create_pl, file_access_pl)
── 42. Error: datatypes-Matrix (@test-zzz-DataSet-IO.R#135) ───────────────────
HDF5-API H5F.c in H5Fcreate(): line 444: unable to create file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #001: H5Fint.c in H5F__create(): line 1364: unable to open file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #002: H5Fint.c in H5F_open(): line 1615: unable to lock the file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #003: H5FD.c in H5FD_lock(): line 1640: driver lock request failed
class: HDF5
major: Virtual File Layer
minor: Can't update object
error #004: H5FDsec2.c in H5FD_sec2_lock(): line 941: unable to lock file, errno = 14, error message = 'Bad address'
class: HDF5
major: File accessibilty
minor: Bad file ID accessed
Backtrace:
1. R6:::h5file(fname, "a")
2. .subset2(public_bind_env, "initialize")(...)
3. hdf5r:::H5File.open(filename, mode, file_create_pl, file_access_pl)
── 43. Error: datatypes-Array (@test-zzz-DataSet-IO.R#200) ────────────────────
HDF5-API H5F.c in H5Fcreate(): line 444: unable to create file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #001: H5Fint.c in H5F__create(): line 1364: unable to open file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #002: H5Fint.c in H5F_open(): line 1615: unable to lock the file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #003: H5FD.c in H5FD_lock(): line 1640: driver lock request failed
class: HDF5
major: Virtual File Layer
minor: Can't update object
error #004: H5FDsec2.c in H5FD_sec2_lock(): line 941: unable to lock file, errno = 14, error message = 'Bad address'
class: HDF5
major: File accessibilty
minor: Bad file ID accessed
Backtrace:
1. R6:::h5file(fname, "a")
2. .subset2(public_bind_env, "initialize")(...)
3. hdf5r:::H5File.open(filename, mode, file_create_pl, file_access_pl)
── 44. Error: datatypes-Array-BugWithChunksize (@test-zzz-DataSet-IO.R#255) ───
HDF5-API H5F.c in H5Fcreate(): line 444: unable to create file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #001: H5Fint.c in H5F__create(): line 1364: unable to open file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #002: H5Fint.c in H5F_open(): line 1615: unable to lock the file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #003: H5FD.c in H5FD_lock(): line 1640: driver lock request failed
class: HDF5
major: Virtual File Layer
minor: Can't update object
error #004: H5FDsec2.c in H5FD_sec2_lock(): line 941: unable to lock file, errno = 14, error message = 'Bad address'
class: HDF5
major: File accessibilty
minor: Bad file ID accessed
Backtrace:
1. R6:::h5file(fname, "a")
2. .subset2(public_bind_env, "initialize")(...)
3. hdf5r:::H5File.open(filename, mode, file_create_pl, file_access_pl)
── 45. Error: datatypes-Array-BugWithASCII (@test-zzz-DataSet-IO.R#267) ───────
HDF5-API H5F.c in H5Fopen(): line 509: unable to open file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #001: H5Fint.c in H5F__open(): line 1400: unable to open file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #002: H5Fint.c in H5F_open(): line 1615: unable to lock the file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #003: H5FD.c in H5FD_lock(): line 1640: driver lock request failed
class: HDF5
major: Virtual File Layer
minor: Can't update object
error #004: H5FDsec2.c in H5FD_sec2_lock(): line 941: unable to lock file, errno = 14, error message = 'Bad address'
class: HDF5
major: File accessibilty
minor: Bad file ID accessed
Backtrace:
1. R6:::h5file(fname, "r")
2. .subset2(public_bind_env, "initialize")(...)
3. hdf5r:::H5File.open(filename, mode, file_create_pl, file_access_pl)
── 46. Error: DataSet-Select-Subset-params (@test-zzz-DataSet-Select-Subset.R#9)
HDF5-API H5F.c in H5Fcreate(): line 444: unable to create file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #001: H5Fint.c in H5F__create(): line 1364: unable to open file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #002: H5Fint.c in H5F_open(): line 1615: unable to lock the file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #003: H5FD.c in H5FD_lock(): line 1640: driver lock request failed
class: HDF5
major: Virtual File Layer
minor: Can't update object
error #004: H5FDsec2.c in H5FD_sec2_lock(): line 941: unable to lock file, errno = 14, error message = 'Bad address'
class: HDF5
major: File accessibilty
minor: Bad file ID accessed
Backtrace:
1. R6:::h5file(fname, "a")
2. .subset2(public_bind_env, "initialize")(...)
3. hdf5r:::H5File.open(filename, mode, file_create_pl, file_access_pl)
── 47. Error: DataSet-Select-Subset-vector-read (@test-zzz-DataSet-Select-Subset
HDF5-API H5F.c in H5Fcreate(): line 444: unable to create file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #001: H5Fint.c in H5F__create(): line 1364: unable to open file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #002: H5Fint.c in H5F_open(): line 1615: unable to lock the file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #003: H5FD.c in H5FD_lock(): line 1640: driver lock request failed
class: HDF5
major: Virtual File Layer
minor: Can't update object
error #004: H5FDsec2.c in H5FD_sec2_lock(): line 941: unable to lock file, errno = 14, error message = 'Bad address'
class: HDF5
major: File accessibilty
minor: Bad file ID accessed
Backtrace:
1. R6:::h5file(fname, "a")
2. .subset2(public_bind_env, "initialize")(...)
3. hdf5r:::H5File.open(filename, mode, file_create_pl, file_access_pl)
── 48. Error: DataSet-Select-Subset-read-string (@test-zzz-DataSet-Select-Subset
HDF5-API H5F.c in H5Fcreate(): line 444: unable to create file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #001: H5Fint.c in H5F__create(): line 1364: unable to open file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #002: H5Fint.c in H5F_open(): line 1615: unable to lock the file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #003: H5FD.c in H5FD_lock(): line 1640: driver lock request failed
class: HDF5
major: Virtual File Layer
minor: Can't update object
error #004: H5FDsec2.c in H5FD_sec2_lock(): line 941: unable to lock file, errno = 14, error message = 'Bad address'
class: HDF5
major: File accessibilty
minor: Bad file ID accessed
Backtrace:
1. R6:::h5file(fname)
2. .subset2(public_bind_env, "initialize")(...)
3. hdf5r:::H5File.open(filename, mode, file_create_pl, file_access_pl)
── 49. Error: DataSet-Select-Subset-read-string-fixed (@test-zzz-DataSet-Select-
HDF5-API H5F.c in H5Fcreate(): line 444: unable to create file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #001: H5Fint.c in H5F__create(): line 1364: unable to open file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #002: H5Fint.c in H5F_open(): line 1615: unable to lock the file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #003: H5FD.c in H5FD_lock(): line 1640: driver lock request failed
class: HDF5
major: Virtual File Layer
minor: Can't update object
error #004: H5FDsec2.c in H5FD_sec2_lock(): line 941: unable to lock file, errno = 14, error message = 'Bad address'
class: HDF5
major: File accessibilty
minor: Bad file ID accessed
Backtrace:
1. R6:::h5file(fname)
2. .subset2(public_bind_env, "initialize")(...)
3. hdf5r:::H5File.open(filename, mode, file_create_pl, file_access_pl)
── 50. Error: DataSet-Select-Subset-vector-write (@test-zzz-DataSet-Select-Subse
HDF5-API H5F.c in H5Fcreate(): line 444: unable to create file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #001: H5Fint.c in H5F__create(): line 1364: unable to open file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #002: H5Fint.c in H5F_open(): line 1615: unable to lock the file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #003: H5FD.c in H5FD_lock(): line 1640: driver lock request failed
class: HDF5
major: Virtual File Layer
minor: Can't update object
error #004: H5FDsec2.c in H5FD_sec2_lock(): line 941: unable to lock file, errno = 14, error message = 'Bad address'
class: HDF5
major: File accessibilty
minor: Bad file ID accessed
Backtrace:
1. R6:::h5file(fname, "a")
2. .subset2(public_bind_env, "initialize")(...)
3. hdf5r:::H5File.open(filename, mode, file_create_pl, file_access_pl)
── 51. Error: DataSet-Select-Subset-matrix-read (@test-zzz-DataSet-Select-Subset
HDF5-API H5F.c in H5Fcreate(): line 444: unable to create file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #001: H5Fint.c in H5F__create(): line 1364: unable to open file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #002: H5Fint.c in H5F_open(): line 1615: unable to lock the file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #003: H5FD.c in H5FD_lock(): line 1640: driver lock request failed
class: HDF5
major: Virtual File Layer
minor: Can't update object
error #004: H5FDsec2.c in H5FD_sec2_lock(): line 941: unable to lock file, errno = 14, error message = 'Bad address'
class: HDF5
major: File accessibilty
minor: Bad file ID accessed
Backtrace:
1. R6:::h5file(fname, "a")
2. .subset2(public_bind_env, "initialize")(...)
3. hdf5r:::H5File.open(filename, mode, file_create_pl, file_access_pl)
── 52. Error: DataSet-Select-Subset-matrix-write (@test-zzz-DataSet-Select-Subse
HDF5-API H5F.c in H5Fcreate(): line 444: unable to create file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #001: H5Fint.c in H5F__create(): line 1364: unable to open file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #002: H5Fint.c in H5F_open(): line 1615: unable to lock the file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #003: H5FD.c in H5FD_lock(): line 1640: driver lock request failed
class: HDF5
major: Virtual File Layer
minor: Can't update object
error #004: H5FDsec2.c in H5FD_sec2_lock(): line 941: unable to lock file, errno = 14, error message = 'Bad address'
class: HDF5
major: File accessibilty
minor: Bad file ID accessed
Backtrace:
1. R6:::h5file(fname, "a")
2. .subset2(public_bind_env, "initialize")(...)
3. hdf5r:::H5File.open(filename, mode, file_create_pl, file_access_pl)
── 53. Error: DataSet-Select-Subset-array-read (@test-zzz-DataSet-Select-Subset.
HDF5-API H5F.c in H5Fcreate(): line 444: unable to create file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #001: H5Fint.c in H5F__create(): line 1364: unable to open file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #002: H5Fint.c in H5F_open(): line 1615: unable to lock the file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #003: H5FD.c in H5FD_lock(): line 1640: driver lock request failed
class: HDF5
major: Virtual File Layer
minor: Can't update object
error #004: H5FDsec2.c in H5FD_sec2_lock(): line 941: unable to lock file, errno = 14, error message = 'Bad address'
class: HDF5
major: File accessibilty
minor: Bad file ID accessed
Backtrace:
1. R6:::h5file(fname, "a")
2. .subset2(public_bind_env, "initialize")(...)
3. hdf5r:::H5File.open(filename, mode, file_create_pl, file_access_pl)
── 54. Error: DataSet-Select-Subset-array-write (@test-zzz-DataSet-Select-Subset
HDF5-API H5F.c in H5Fcreate(): line 444: unable to create file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #001: H5Fint.c in H5F__create(): line 1364: unable to open file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #002: H5Fint.c in H5F_open(): line 1615: unable to lock the file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #003: H5FD.c in H5FD_lock(): line 1640: driver lock request failed
class: HDF5
major: Virtual File Layer
minor: Can't update object
error #004: H5FDsec2.c in H5FD_sec2_lock(): line 941: unable to lock file, errno = 14, error message = 'Bad address'
class: HDF5
major: File accessibilty
minor: Bad file ID accessed
Backtrace:
1. R6:::h5file(fname, "a")
2. .subset2(public_bind_env, "initialize")(...)
3. hdf5r:::H5File.open(filename, mode, file_create_pl, file_access_pl)
── 55. Error: DataSet-extend (@test-zzz-DataSet-extend.R#10) ──────────────────
HDF5-API H5F.c in H5Fcreate(): line 444: unable to create file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #001: H5Fint.c in H5F__create(): line 1364: unable to open file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #002: H5Fint.c in H5F_open(): line 1615: unable to lock the file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #003: H5FD.c in H5FD_lock(): line 1640: driver lock request failed
class: HDF5
major: Virtual File Layer
minor: Can't update object
error #004: H5FDsec2.c in H5FD_sec2_lock(): line 941: unable to lock file, errno = 14, error message = 'Bad address'
class: HDF5
major: File accessibilty
minor: Bad file ID accessed
Backtrace:
1. R6:::h5file(fname, "a")
2. .subset2(public_bind_env, "initialize")(...)
3. hdf5r:::H5File.open(filename, mode, file_create_pl, file_access_pl)
── 56. Error: DataSet-extend-matrix-rbind (@test-zzz-DataSet-extend.R#55) ─────
HDF5-API H5F.c in H5Fcreate(): line 444: unable to create file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #001: H5Fint.c in H5F__create(): line 1364: unable to open file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #002: H5Fint.c in H5F_open(): line 1615: unable to lock the file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #003: H5FD.c in H5FD_lock(): line 1640: driver lock request failed
class: HDF5
major: Virtual File Layer
minor: Can't update object
error #004: H5FDsec2.c in H5FD_sec2_lock(): line 941: unable to lock file, errno = 14, error message = 'Bad address'
class: HDF5
major: File accessibilty
minor: Bad file ID accessed
Backtrace:
1. R6:::h5file(fname, "a")
2. .subset2(public_bind_env, "initialize")(...)
3. hdf5r:::H5File.open(filename, mode, file_create_pl, file_access_pl)
── 57. Error: DataSet-extend-matrix-cbind (@test-zzz-DataSet-extend.R#89) ─────
HDF5-API H5F.c in H5Fcreate(): line 444: unable to create file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #001: H5Fint.c in H5F__create(): line 1364: unable to open file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #002: H5Fint.c in H5F_open(): line 1615: unable to lock the file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #003: H5FD.c in H5FD_lock(): line 1640: driver lock request failed
class: HDF5
major: Virtual File Layer
minor: Can't update object
error #004: H5FDsec2.c in H5FD_sec2_lock(): line 941: unable to lock file, errno = 14, error message = 'Bad address'
class: HDF5
major: File accessibilty
minor: Bad file ID accessed
Backtrace:
1. R6:::h5file(fname, "a")
2. .subset2(public_bind_env, "initialize")(...)
3. hdf5r:::H5File.open(filename, mode, file_create_pl, file_access_pl)
── 58. Error: DataSet-extend-vector-c (@test-zzz-DataSet-extend.R#124) ────────
HDF5-API H5F.c in H5Fcreate(): line 444: unable to create file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #001: H5Fint.c in H5F__create(): line 1364: unable to open file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #002: H5Fint.c in H5F_open(): line 1615: unable to lock the file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #003: H5FD.c in H5FD_lock(): line 1640: driver lock request failed
class: HDF5
major: Virtual File Layer
minor: Can't update object
error #004: H5FDsec2.c in H5FD_sec2_lock(): line 941: unable to lock file, errno = 14, error message = 'Bad address'
class: HDF5
major: File accessibilty
minor: Bad file ID accessed
Backtrace:
1. R6:::h5file(fname, "a")
2. .subset2(public_bind_env, "initialize")(...)
3. hdf5r:::H5File.open(filename, mode, file_create_pl, file_access_pl)
── 59. Error: datatypes-Array-BugWithScalar (@test-zzz-DataSet-scalar.R#7) ────
HDF5-API H5F.c in H5Fopen(): line 509: unable to open file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #001: H5Fint.c in H5F__open(): line 1400: unable to open file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #002: H5Fint.c in H5F_open(): line 1615: unable to lock the file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #003: H5FD.c in H5FD_lock(): line 1640: driver lock request failed
class: HDF5
major: Virtual File Layer
minor: Can't update object
error #004: H5FDsec2.c in H5FD_sec2_lock(): line 941: unable to lock file, errno = 14, error message = 'Bad address'
class: HDF5
major: File accessibilty
minor: Bad file ID accessed
Backtrace:
1. R6:::h5file(fname, "r")
2. .subset2(public_bind_env, "initialize")(...)
3. hdf5r:::H5File.open(filename, mode, file_create_pl, file_access_pl)
── 60. Error: DataSet-createDataset (@test-zzz-DataSet.R#7) ───────────────────
HDF5-API H5F.c in H5Fcreate(): line 444: unable to create file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #001: H5Fint.c in H5F__create(): line 1364: unable to open file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #002: H5Fint.c in H5F_open(): line 1615: unable to lock the file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #003: H5FD.c in H5FD_lock(): line 1640: driver lock request failed
class: HDF5
major: Virtual File Layer
minor: Can't update object
error #004: H5FDsec2.c in H5FD_sec2_lock(): line 941: unable to lock file, errno = 14, error message = 'Bad address'
class: HDF5
major: File accessibilty
minor: Bad file ID accessed
Backtrace:
1. R6:::h5file(fname, "a")
2. .subset2(public_bind_env, "initialize")(...)
3. hdf5r:::H5File.open(filename, mode, file_create_pl, file_access_pl)
── 61. Error: DataSet-createDataset-chunksize (@test-zzz-DataSet.R#18) ────────
HDF5-API H5F.c in H5Fcreate(): line 444: unable to create file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #001: H5Fint.c in H5F__create(): line 1364: unable to open file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #002: H5Fint.c in H5F_open(): line 1615: unable to lock the file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #003: H5FD.c in H5FD_lock(): line 1640: driver lock request failed
class: HDF5
major: Virtual File Layer
minor: Can't update object
error #004: H5FDsec2.c in H5FD_sec2_lock(): line 941: unable to lock file, errno = 14, error message = 'Bad address'
class: HDF5
major: File accessibilty
minor: Bad file ID accessed
Backtrace:
1. R6:::h5file(fname, "a")
2. .subset2(public_bind_env, "initialize")(...)
3. hdf5r:::H5File.open(filename, mode, file_create_pl, file_access_pl)
── 62. Error: DataSet-createDataset-maxdimensions (@test-zzz-DataSet.R#52) ────
HDF5-API H5F.c in H5Fcreate(): line 444: unable to create file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #001: H5Fint.c in H5F__create(): line 1364: unable to open file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #002: H5Fint.c in H5F_open(): line 1615: unable to lock the file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #003: H5FD.c in H5FD_lock(): line 1640: driver lock request failed
class: HDF5
major: Virtual File Layer
minor: Can't update object
error #004: H5FDsec2.c in H5FD_sec2_lock(): line 941: unable to lock file, errno = 14, error message = 'Bad address'
class: HDF5
major: File accessibilty
minor: Bad file ID accessed
Backtrace:
1. R6:::h5file(fname, "a")
2. .subset2(public_bind_env, "initialize")(...)
3. hdf5r:::H5File.open(filename, mode, file_create_pl, file_access_pl)
── 63. Error: DataSet-createDataset-compression (@test-zzz-DataSet.R#84) ──────
HDF5-API H5F.c in H5Fcreate(): line 444: unable to create file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #001: H5Fint.c in H5F__create(): line 1364: unable to open file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #002: H5Fint.c in H5F_open(): line 1615: unable to lock the file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #003: H5FD.c in H5FD_lock(): line 1640: driver lock request failed
class: HDF5
major: Virtual File Layer
minor: Can't update object
error #004: H5FDsec2.c in H5FD_sec2_lock(): line 941: unable to lock file, errno = 14, error message = 'Bad address'
class: HDF5
major: File accessibilty
minor: Bad file ID accessed
Backtrace:
1. R6:::h5file(fname, "a")
2. .subset2(public_bind_env, "initialize")(...)
3. hdf5r:::H5File.open(filename, mode, file_create_pl, file_access_pl)
── 64. Error: DataSet-list-dataset (@test-zzz-DataSet.R#106) ──────────────────
HDF5-API H5F.c in H5Fcreate(): line 444: unable to create file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #001: H5Fint.c in H5F__create(): line 1364: unable to open file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #002: H5Fint.c in H5F_open(): line 1615: unable to lock the file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #003: H5FD.c in H5FD_lock(): line 1640: driver lock request failed
class: HDF5
major: Virtual File Layer
minor: Can't update object
error #004: H5FDsec2.c in H5FD_sec2_lock(): line 941: unable to lock file, errno = 14, error message = 'Bad address'
class: HDF5
major: File accessibilty
minor: Bad file ID accessed
Backtrace:
1. R6:::h5file(fname, "a")
2. .subset2(public_bind_env, "initialize")(...)
3. hdf5r:::H5File.open(filename, mode, file_create_pl, file_access_pl)
── 65. Error: DataSet-list-dataset (@test-zzz-DataSet.R#157) ──────────────────
HDF5-API H5F.c in H5Fcreate(): line 444: unable to create file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #001: H5Fint.c in H5F__create(): line 1364: unable to open file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #002: H5Fint.c in H5F_open(): line 1615: unable to lock the file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #003: H5FD.c in H5FD_lock(): line 1640: driver lock request failed
class: HDF5
major: Virtual File Layer
minor: Can't update object
error #004: H5FDsec2.c in H5FD_sec2_lock(): line 941: unable to lock file, errno = 14, error message = 'Bad address'
class: HDF5
major: File accessibilty
minor: Bad file ID accessed
Backtrace:
1. R6:::h5file(fname, "a")
2. .subset2(public_bind_env, "initialize")(...)
3. hdf5r:::H5File.open(filename, mode, file_create_pl, file_access_pl)
── 66. Error: DataSet-list-dataset-link (@test-zzz-DataSet.R#179) ─────────────
HDF5-API H5F.c in H5Fopen(): line 509: unable to open file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #001: H5Fint.c in H5F__open(): line 1400: unable to open file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #002: H5Fint.c in H5F_open(): line 1615: unable to lock the file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #003: H5FD.c in H5FD_lock(): line 1640: driver lock request failed
class: HDF5
major: Virtual File Layer
minor: Can't update object
error #004: H5FDsec2.c in H5FD_sec2_lock(): line 941: unable to lock file, errno = 14, error message = 'Bad address'
class: HDF5
major: File accessibilty
minor: Bad file ID accessed
Backtrace:
1. R6:::h5file(fname, "r")
2. .subset2(public_bind_env, "initialize")(...)
3. hdf5r:::H5File.open(filename, mode, file_create_pl, file_access_pl)
── 67. Error: DataSet-Bug-F32-Issue10 (@test-zzz-DataSet.R#202) ───────────────
HDF5-API H5F.c in H5Fopen(): line 509: unable to open file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #001: H5Fint.c in H5F__open(): line 1400: unable to open file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #002: H5Fint.c in H5F_open(): line 1615: unable to lock the file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #003: H5FD.c in H5FD_lock(): line 1640: driver lock request failed
class: HDF5
major: Virtual File Layer
minor: Can't update object
error #004: H5FDsec2.c in H5FD_sec2_lock(): line 941: unable to lock file, errno = 14, error message = 'Bad address'
class: HDF5
major: File accessibilty
minor: Bad file ID accessed
Backtrace:
1. R6:::h5file(fname, "r")
2. .subset2(public_bind_env, "initialize")(...)
3. hdf5r:::H5File.open(filename, mode, file_create_pl, file_access_pl)
── 68. Error: H5File-Subset-Group (@test-zzz-H5File-Subset.R#6) ───────────────
HDF5-API H5F.c in H5Fcreate(): line 444: unable to create file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #001: H5Fint.c in H5F__create(): line 1364: unable to open file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #002: H5Fint.c in H5F_open(): line 1615: unable to lock the file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #003: H5FD.c in H5FD_lock(): line 1640: driver lock request failed
class: HDF5
major: Virtual File Layer
minor: Can't update object
error #004: H5FDsec2.c in H5FD_sec2_lock(): line 941: unable to lock file, errno = 14, error message = 'Bad address'
class: HDF5
major: File accessibilty
minor: Bad file ID accessed
Backtrace:
1. R6:::h5file(fname, "a")
2. .subset2(public_bind_env, "initialize")(...)
3. hdf5r:::H5File.open(filename, mode, file_create_pl, file_access_pl)
── 69. Error: H5File-Subset-DataSet (@test-zzz-H5File-Subset.R#41) ────────────
HDF5-API H5F.c in H5Fcreate(): line 444: unable to create file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #001: H5Fint.c in H5F__create(): line 1364: unable to open file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #002: H5Fint.c in H5F_open(): line 1615: unable to lock the file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #003: H5FD.c in H5FD_lock(): line 1640: driver lock request failed
class: HDF5
major: Virtual File Layer
minor: Can't update object
error #004: H5FDsec2.c in H5FD_sec2_lock(): line 941: unable to lock file, errno = 14, error message = 'Bad address'
class: HDF5
major: File accessibilty
minor: Bad file ID accessed
Backtrace:
1. R6:::h5file(fname, "a")
2. .subset2(public_bind_env, "initialize")(...)
3. hdf5r:::H5File.open(filename, mode, file_create_pl, file_access_pl)
── 70. Error: H5File-FileMode-param-a (@test-zzz-H5File.R#26) ─────────────────
HDF5-API H5F.c in H5Fcreate(): line 444: unable to create file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #001: H5Fint.c in H5F__create(): line 1364: unable to open file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #002: H5Fint.c in H5F_open(): line 1615: unable to lock the file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #003: H5FD.c in H5FD_lock(): line 1640: driver lock request failed
class: HDF5
major: Virtual File Layer
minor: Can't update object
error #004: H5FDsec2.c in H5FD_sec2_lock(): line 941: unable to lock file, errno = 14, error message = 'Bad address'
class: HDF5
major: File accessibilty
minor: Bad file ID accessed
Backtrace:
1. R6:::h5file(fname)
2. .subset2(public_bind_env, "initialize")(...)
3. hdf5r:::H5File.open(filename, mode, file_create_pl, file_access_pl)
── 71. Error: H5File-FileMode-param-w- (@test-zzz-H5File.R#52) ────────────────
HDF5-API H5F.c in H5Fcreate(): line 444: unable to create file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #001: H5Fint.c in H5F__create(): line 1364: unable to open file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #002: H5Fint.c in H5F_open(): line 1615: unable to lock the file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #003: H5FD.c in H5FD_lock(): line 1640: driver lock request failed
class: HDF5
major: Virtual File Layer
minor: Can't update object
error #004: H5FDsec2.c in H5FD_sec2_lock(): line 941: unable to lock file, errno = 14, error message = 'Bad address'
class: HDF5
major: File accessibilty
minor: Bad file ID accessed
Backtrace:
1. R6:::h5file(fname, "w-")
2. .subset2(public_bind_env, "initialize")(...)
3. hdf5r:::H5File.open(filename, mode, file_create_pl, file_access_pl)
── 72. Error: H5File-FileMode-param-w (@test-zzz-H5File.R#68) ─────────────────
HDF5-API H5F.c in H5Fcreate(): line 444: unable to create file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #001: H5Fint.c in H5F__create(): line 1364: unable to open file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #002: H5Fint.c in H5F_open(): line 1615: unable to lock the file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #003: H5FD.c in H5FD_lock(): line 1640: driver lock request failed
class: HDF5
major: Virtual File Layer
minor: Can't update object
error #004: H5FDsec2.c in H5FD_sec2_lock(): line 941: unable to lock file, errno = 14, error message = 'Bad address'
class: HDF5
major: File accessibilty
minor: Bad file ID accessed
Backtrace:
1. R6:::h5file(fname, "w")
2. .subset2(public_bind_env, "initialize")(...)
3. hdf5r:::H5File.open(filename, mode, file_create_pl, file_access_pl)
── 73. Error: H5File-FileMode-param-r (@test-zzz-H5File.R#90) ─────────────────
HDF5-API H5F.c in H5Fopen(): line 509: unable to open file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #001: H5Fint.c in H5F__open(): line 1400: unable to open file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #002: H5Fint.c in H5F_open(): line 1615: unable to lock the file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #003: H5FD.c in H5FD_lock(): line 1640: driver lock request failed
class: HDF5
major: Virtual File Layer
minor: Can't update object
error #004: H5FDsec2.c in H5FD_sec2_lock(): line 941: unable to lock file, errno = 14, error message = 'Bad address'
class: HDF5
major: File accessibilty
minor: Bad file ID accessed
Backtrace:
1. R6:::h5file(fname, "r")
2. .subset2(public_bind_env, "initialize")(...)
3. hdf5r:::H5File.open(filename, mode, file_create_pl, file_access_pl)
── 74. Error: H5File-FileMode-param-r+ (@test-zzz-H5File.R#112) ───────────────
HDF5-API H5F.c in H5Fcreate(): line 444: unable to create file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #001: H5Fint.c in H5F__create(): line 1364: unable to open file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #002: H5Fint.c in H5F_open(): line 1615: unable to lock the file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #003: H5FD.c in H5FD_lock(): line 1640: driver lock request failed
class: HDF5
major: Virtual File Layer
minor: Can't update object
error #004: H5FDsec2.c in H5FD_sec2_lock(): line 941: unable to lock file, errno = 14, error message = 'Bad address'
class: HDF5
major: File accessibilty
minor: Bad file ID accessed
Backtrace:
1. R6:::h5file(fname, "a")
2. .subset2(public_bind_env, "initialize")(...)
3. hdf5r:::H5File.open(filename, mode, file_create_pl, file_access_pl)
── 75. Error: H5File-show (@test-zzz-H5File.R#129) ────────────────────────────
HDF5-API H5F.c in H5Fcreate(): line 444: unable to create file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #001: H5Fint.c in H5F__create(): line 1364: unable to open file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #002: H5Fint.c in H5F_open(): line 1615: unable to lock the file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #003: H5FD.c in H5FD_lock(): line 1640: driver lock request failed
class: HDF5
major: Virtual File Layer
minor: Can't update object
error #004: H5FDsec2.c in H5FD_sec2_lock(): line 941: unable to lock file, errno = 14, error message = 'Bad address'
class: HDF5
major: File accessibilty
minor: Bad file ID accessed
Backtrace:
1. R6:::h5file(fname)
2. .subset2(public_bind_env, "initialize")(...)
3. hdf5r:::H5File.open(filename, mode, file_create_pl, file_access_pl)
── 76. Error: H5File-is-h5file (@test-zzz-H5File.R#142) ───────────────────────
HDF5-API H5F.c in H5Fcreate(): line 444: unable to create file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #001: H5Fint.c in H5F__create(): line 1364: unable to open file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #002: H5Fint.c in H5F_open(): line 1615: unable to lock the file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #003: H5FD.c in H5FD_lock(): line 1640: driver lock request failed
class: HDF5
major: Virtual File Layer
minor: Can't update object
error #004: H5FDsec2.c in H5FD_sec2_lock(): line 941: unable to lock file, errno = 14, error message = 'Bad address'
class: HDF5
major: File accessibilty
minor: Bad file ID accessed
Backtrace:
1. R6:::h5file(fname)
2. .subset2(public_bind_env, "initialize")(...)
3. hdf5r:::H5File.open(filename, mode, file_create_pl, file_access_pl)
── 77. Error: H5File-flush (@test-zzz-H5File.R#158) ───────────────────────────
HDF5-API H5F.c in H5Fcreate(): line 444: unable to create file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #001: H5Fint.c in H5F__create(): line 1364: unable to open file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #002: H5Fint.c in H5F_open(): line 1615: unable to lock the file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #003: H5FD.c in H5FD_lock(): line 1640: driver lock request failed
class: HDF5
major: Virtual File Layer
minor: Can't update object
error #004: H5FDsec2.c in H5FD_sec2_lock(): line 941: unable to lock file, errno = 14, error message = 'Bad address'
class: HDF5
major: File accessibilty
minor: Bad file ID accessed
Backtrace:
1. R6:::h5file(fname)
2. .subset2(public_bind_env, "initialize")(...)
3. hdf5r:::H5File.open(filename, mode, file_create_pl, file_access_pl)
── 78. Error: H5Group-param (@test-zzz-H5Group.R#6) ───────────────────────────
HDF5-API H5F.c in H5Fcreate(): line 444: unable to create file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #001: H5Fint.c in H5F__create(): line 1364: unable to open file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #002: H5Fint.c in H5F_open(): line 1615: unable to lock the file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #003: H5FD.c in H5FD_lock(): line 1640: driver lock request failed
class: HDF5
major: Virtual File Layer
minor: Can't update object
error #004: H5FDsec2.c in H5FD_sec2_lock(): line 941: unable to lock file, errno = 14, error message = 'Bad address'
class: HDF5
major: File accessibilty
minor: Bad file ID accessed
Backtrace:
1. R6:::h5file(fname)
2. .subset2(public_bind_env, "initialize")(...)
3. hdf5r:::H5File.open(filename, mode, file_create_pl, file_access_pl)
── 79. Error: H5Group-createGroup (@test-zzz-H5Group.R#31) ────────────────────
HDF5-API H5F.c in H5Fcreate(): line 444: unable to create file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #001: H5Fint.c in H5F__create(): line 1364: unable to open file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #002: H5Fint.c in H5F_open(): line 1615: unable to lock the file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #003: H5FD.c in H5FD_lock(): line 1640: driver lock request failed
class: HDF5
major: Virtual File Layer
minor: Can't update object
error #004: H5FDsec2.c in H5FD_sec2_lock(): line 941: unable to lock file, errno = 14, error message = 'Bad address'
class: HDF5
major: File accessibilty
minor: Bad file ID accessed
Backtrace:
1. R6:::h5file(fname)
2. .subset2(public_bind_env, "initialize")(...)
3. hdf5r:::H5File.open(filename, mode, file_create_pl, file_access_pl)
── 80. Error: H5Group-openLocation (@test-zzz-H5Group.R#51) ───────────────────
HDF5-API H5F.c in H5Fopen(): line 509: unable to open file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #001: H5Fint.c in H5F__open(): line 1400: unable to open file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #002: H5Fint.c in H5F_open(): line 1615: unable to lock the file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #003: H5FD.c in H5FD_lock(): line 1640: driver lock request failed
class: HDF5
major: Virtual File Layer
minor: Can't update object
error #004: H5FDsec2.c in H5FD_sec2_lock(): line 941: unable to lock file, errno = 14, error message = 'Bad address'
class: HDF5
major: File accessibilty
minor: Bad file ID accessed
Backtrace:
1. R6:::h5file(fname, "r")
2. .subset2(public_bind_env, "initialize")(...)
3. hdf5r:::H5File.open(filename, mode, file_create_pl, file_access_pl)
── 81. Error: H5Group-openGroup (@test-zzz-H5Group.R#80) ──────────────────────
HDF5-API H5F.c in H5Fopen(): line 509: unable to open file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #001: H5Fint.c in H5F__open(): line 1400: unable to open file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #002: H5Fint.c in H5F_open(): line 1615: unable to lock the file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #003: H5FD.c in H5FD_lock(): line 1640: driver lock request failed
class: HDF5
major: Virtual File Layer
minor: Can't update object
error #004: H5FDsec2.c in H5FD_sec2_lock(): line 941: unable to lock file, errno = 14, error message = 'Bad address'
class: HDF5
major: File accessibilty
minor: Bad file ID accessed
Backtrace:
1. R6:::h5file(fname, "r")
2. .subset2(public_bind_env, "initialize")(...)
3. hdf5r:::H5File.open(filename, mode, file_create_pl, file_access_pl)
── 82. Error: H5Group-existsGroup (@test-zzz-H5Group.R#109) ───────────────────
HDF5-API H5F.c in H5Fopen(): line 509: unable to open file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #001: H5Fint.c in H5F__open(): line 1400: unable to open file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #002: H5Fint.c in H5F_open(): line 1615: unable to lock the file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #003: H5FD.c in H5FD_lock(): line 1640: driver lock request failed
class: HDF5
major: Virtual File Layer
minor: Can't update object
error #004: H5FDsec2.c in H5FD_sec2_lock(): line 941: unable to lock file, errno = 14, error message = 'Bad address'
class: HDF5
major: File accessibilty
minor: Bad file ID accessed
Backtrace:
1. R6:::h5file(fname, "r")
2. .subset2(public_bind_env, "initialize")(...)
3. hdf5r:::H5File.open(filename, mode, file_create_pl, file_access_pl)
── 83. Error: CommonFG-list-groups (@test-zzz-H5Group.R#124) ──────────────────
HDF5-API H5F.c in H5Fcreate(): line 444: unable to create file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #001: H5Fint.c in H5F__create(): line 1364: unable to open file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #002: H5Fint.c in H5F_open(): line 1615: unable to lock the file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #003: H5FD.c in H5FD_lock(): line 1640: driver lock request failed
class: HDF5
major: Virtual File Layer
minor: Can't update object
error #004: H5FDsec2.c in H5FD_sec2_lock(): line 941: unable to lock file, errno = 14, error message = 'Bad address'
class: HDF5
major: File accessibilty
minor: Bad file ID accessed
Backtrace:
1. R6:::h5file(fname, "a")
2. .subset2(public_bind_env, "initialize")(...)
3. hdf5r:::H5File.open(filename, mode, file_create_pl, file_access_pl)
── 84. Error: CommonFG-unlink (@test-zzz-H5Group.R#172) ───────────────────────
HDF5-API H5F.c in H5Fcreate(): line 444: unable to create file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #001: H5Fint.c in H5F__create(): line 1364: unable to open file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #002: H5Fint.c in H5F_open(): line 1615: unable to lock the file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #003: H5FD.c in H5FD_lock(): line 1640: driver lock request failed
class: HDF5
major: Virtual File Layer
minor: Can't update object
error #004: H5FDsec2.c in H5FD_sec2_lock(): line 941: unable to lock file, errno = 14, error message = 'Bad address'
class: HDF5
major: File accessibilty
minor: Bad file ID accessed
Backtrace:
1. R6:::h5file(fname)
2. .subset2(public_bind_env, "initialize")(...)
3. hdf5r:::H5File.open(filename, mode, file_create_pl, file_access_pl)
── 85. Error: datatypes-IO (@test-zzz-io.R#10) ────────────────────────────────
HDF5-API H5F.c in H5Fcreate(): line 444: unable to create file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #001: H5Fint.c in H5F__create(): line 1364: unable to open file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #002: H5Fint.c in H5F_open(): line 1615: unable to lock the file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #003: H5FD.c in H5FD_lock(): line 1640: driver lock request failed
class: HDF5
major: Virtual File Layer
minor: Can't update object
error #004: H5FDsec2.c in H5FD_sec2_lock(): line 941: unable to lock file, errno = 14, error message = 'Bad address'
class: HDF5
major: File accessibilty
minor: Bad file ID accessed
Backtrace:
1. R6:::h5file(fname, "a")
2. .subset2(public_bind_env, "initialize")(...)
3. hdf5r:::H5File.open(filename, mode, file_create_pl, file_access_pl)
── 86. Error: DataSet-VLEN-Vector (@test-zzz-vlen.R#49) ───────────────────────
HDF5-API H5F.c in H5Fcreate(): line 444: unable to create file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #001: H5Fint.c in H5F__create(): line 1364: unable to open file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #002: H5Fint.c in H5F_open(): line 1615: unable to lock the file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #003: H5FD.c in H5FD_lock(): line 1640: driver lock request failed
class: HDF5
major: Virtual File Layer
minor: Can't update object
error #004: H5FDsec2.c in H5FD_sec2_lock(): line 941: unable to lock file, errno = 14, error message = 'Bad address'
class: HDF5
major: File accessibilty
minor: Bad file ID accessed
Backtrace:
1. R6:::h5file(fname, "a")
2. .subset2(public_bind_env, "initialize")(...)
3. hdf5r:::H5File.open(filename, mode, file_create_pl, file_access_pl)
── 87. Error: DataSet-VLEN-Vector-Attribute (@test-zzz-vlen.R#98) ─────────────
HDF5-API H5F.c in H5Fcreate(): line 444: unable to create file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #001: H5Fint.c in H5F__create(): line 1364: unable to open file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #002: H5Fint.c in H5F_open(): line 1615: unable to lock the file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #003: H5FD.c in H5FD_lock(): line 1640: driver lock request failed
class: HDF5
major: Virtual File Layer
minor: Can't update object
error #004: H5FDsec2.c in H5FD_sec2_lock(): line 941: unable to lock file, errno = 14, error message = 'Bad address'
class: HDF5
major: File accessibilty
minor: Bad file ID accessed
Backtrace:
1. R6:::h5file(fname, "a")
2. .subset2(public_bind_env, "initialize")(...)
3. hdf5r:::H5File.open(filename, mode, file_create_pl, file_access_pl)
══ testthat results ═══════════════════════════════════════════════════════════
[ OK: 191 | SKIPPED: 2 | WARNINGS: 8 | FAILED: 87 ]
1. Error: Dataset with more than 2^31 rows (@test-64bit_support.R#40)
2. Error: Datatype conversion with 64bit (@test-64bit_support.R#75)
3. Error: Convert H5T_FLOAT works (@test-convert.R#33)
4. Error: Convert H5T_INTEGER works (@test-convert.R#77)
5. Error: Convert H5T_ENUM works (@test-convert.R#131)
6. Error: Convert H5T_STRING works (@test-convert.R#171)
7. Error: Convert R_Complex works (@test-convert.R#222)
8. Error: Convert H5T_COMPOUND works (@test-convert.R#235)
9. Error: Convert H5T_ARRAY works (@test-convert.R#246)
1. ...
Error: testthat unit tests failed
Execution halted
Flavor: r-patched-solaris-x86
Version: 1.3.0
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
...
--- re-building ‘hdf5r.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
Warning in block_exec(params) :
Failed to tidy R code in chunk 'unnamed-chunk-2'. Reason:
Error in loadNamespace(name) : there is no package called 'formatR'
Quitting from lines 73-77 (hdf5r.Rmd)
Error: processing vignette 'hdf5r.Rmd' failed with diagnostics:
HDF5-API Errors:
error #000: H5F.c in H5Fcreate(): line 444: unable to create file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #001: H5Fint.c in H5F__create(): line 1364: unable to open file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #002: H5Fint.c in H5F_open(): line 1615: unable to lock the file
class: HDF5
major: File accessibilty
minor: Unable to open file
error #003: H5FD.c in H5FD_lock(): line 1640: driver lock request failed
class: HDF5
major: Virtual File Layer
minor: Can't update object
error #004: H5FDsec2.c in H5FD_sec2_lock(): line 941: unable to lock file, errno = 14, error message = 'Bad address'
class: HDF5
major: File accessibilty
minor: Bad file ID accessed
--- failed re-building ‘hdf5r.Rmd’
SUMMARY: processing the following file failed:
‘hdf5r.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-patched-solaris-x86