Last updated on 2019-11-26 00:51:58 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.0.1 | 15.52 | 143.22 | 158.74 | ERROR | |
| r-devel-linux-x86_64-debian-gcc | 1.0.1 | 16.51 | 118.45 | 134.96 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 1.0.1 | 240.89 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 1.0.1 | 229.57 | OK | |||
| r-devel-windows-ix86+x86_64 | 1.0.1 | 47.00 | 233.00 | 280.00 | OK | |
| r-devel-windows-ix86+x86_64-gcc8 | 1.0.1 | 33.00 | 179.00 | 212.00 | OK | |
| r-patched-linux-x86_64 | 1.0.1 | 16.16 | 176.64 | 192.80 | OK | |
| r-patched-solaris-x86 | 1.0.1 | 315.80 | OK | |||
| r-release-linux-x86_64 | 1.0.1 | 17.18 | 178.22 | 195.40 | OK | |
| r-release-windows-ix86+x86_64 | 1.0.1 | 39.00 | 223.00 | 262.00 | OK | |
| r-release-osx-x86_64 | 1.0.1 | OK | ||||
| r-oldrel-windows-ix86+x86_64 | 1.0.1 | 19.00 | 229.00 | 248.00 | OK | |
| r-oldrel-osx-x86_64 | 1.0.1 | OK |
Version: 1.0.1
Check: examples
Result: ERROR
Running examples in 'mopa-Ex.R' failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: OCSVMprofiling
> ### Title: Environmental profiling with One-Classification Support Vector
> ### Machine
> ### Aliases: OCSVMprofiling
>
> ### ** Examples
>
> ## Load presence data
> data(Oak_phylo2)
>
> ## Load climate data
> destfile <- tempfile()
> data.url <- "https://raw.githubusercontent.com/SantanderMetGroup/mopa/master/data/biostack.rda"
> download.file(data.url, destfile)
trying URL 'https://raw.githubusercontent.com/SantanderMetGroup/mopa/master/data/biostack.rda'
Content type 'application/octet-stream' length 6885444 bytes (6.6 MB)
==================================================
downloaded 6.6 MB
> load(destfile, verbose = TRUE)
Loading objects:
biostack
>
> ## Spatial reference
> projection(biostack$baseline) <- CRS("+proj=longlat +init=epsg:4326")
> r <- biostack$baseline[[1]]
> ## Background of the whole study area
> bg <- backgroundGrid(r)
----------- FAILURE REPORT --------------
--- failure: the condition has length > 1 ---
--- srcref ---
:
--- package (from environment) ---
mopa
--- call from context ---
boundingCoords(coordinates(sp_grid))
--- call from argument ---
if (class(xy) == "matrix") xy <- as.data.frame(xy)
--- R stacktrace ---
where 1: boundingCoords(coordinates(sp_grid))
where 2: backgroundGrid(r)
--- value of length: 2 type: logical ---
[1] TRUE FALSE
--- function from context ---
function (xy)
{
if (class(xy) == "matrix")
xy <- as.data.frame(xy)
if (class(xy) == "data.frame") {
pres.list <- list(xy)
}
else {
pres.list <- xy
}
box <- numeric()
l.box <- list()
for (i in 1:length(pres.list)) {
length(l.box) <- i
box[1] <- min(pres.list[[i]][, 1])
box[2] <- max(pres.list[[i]][, 1])
box[3] <- min(pres.list[[i]][, 2])
box[4] <- max(pres.list[[i]][, 2])
l.box[[i]] <- box
}
names(l.box) <- names(pres.list)
return(l.box)
}
<bytecode: 0xb129358>
<environment: namespace:mopa>
--- function search by body ---
Function boundingCoords in namespace mopa has this body.
----------- END OF FAILURE REPORT --------------
Fatal error: the condition has length > 1
Flavor: r-devel-linux-x86_64-debian-clang
Version: 1.0.1
Check: examples
Result: ERROR
Running examples in ‘mopa-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: OCSVMprofiling
> ### Title: Environmental profiling with One-Classification Support Vector
> ### Machine
> ### Aliases: OCSVMprofiling
>
> ### ** Examples
>
> ## Load presence data
> data(Oak_phylo2)
>
> ## Load climate data
> destfile <- tempfile()
> data.url <- "https://raw.githubusercontent.com/SantanderMetGroup/mopa/master/data/biostack.rda"
> download.file(data.url, destfile)
trying URL 'https://raw.githubusercontent.com/SantanderMetGroup/mopa/master/data/biostack.rda'
Content type 'application/octet-stream' length 6885444 bytes (6.6 MB)
==================================================
downloaded 6.6 MB
> load(destfile, verbose = TRUE)
Loading objects:
biostack
>
> ## Spatial reference
> projection(biostack$baseline) <- CRS("+proj=longlat +init=epsg:4326")
> r <- biostack$baseline[[1]]
> ## Background of the whole study area
> bg <- backgroundGrid(r)
----------- FAILURE REPORT --------------
--- failure: the condition has length > 1 ---
--- srcref ---
:
--- package (from environment) ---
mopa
--- call from context ---
boundingCoords(coordinates(sp_grid))
--- call from argument ---
if (class(xy) == "matrix") xy <- as.data.frame(xy)
--- R stacktrace ---
where 1: boundingCoords(coordinates(sp_grid))
where 2: backgroundGrid(r)
--- value of length: 2 type: logical ---
[1] TRUE FALSE
--- function from context ---
function (xy)
{
if (class(xy) == "matrix")
xy <- as.data.frame(xy)
if (class(xy) == "data.frame") {
pres.list <- list(xy)
}
else {
pres.list <- xy
}
box <- numeric()
l.box <- list()
for (i in 1:length(pres.list)) {
length(l.box) <- i
box[1] <- min(pres.list[[i]][, 1])
box[2] <- max(pres.list[[i]][, 1])
box[3] <- min(pres.list[[i]][, 2])
box[4] <- max(pres.list[[i]][, 2])
l.box[[i]] <- box
}
names(l.box) <- names(pres.list)
return(l.box)
}
<bytecode: 0x55bd7a4cd458>
<environment: namespace:mopa>
--- function search by body ---
Function boundingCoords in namespace mopa has this body.
----------- END OF FAILURE REPORT --------------
Fatal error: the condition has length > 1
Flavor: r-devel-linux-x86_64-debian-gcc