Functions designed to connect disease-related differential proteins and co-expression network. It provides the basic statics analysis included t test, ANOVA analysis. The network construction is not offered by the package, you can used 'WGCNA' package which you can learn in Peter et al. (2008) <doi:10.1186/1471-2105-9-559>. It also provides module analysis included PCA analysis, two enrichment analysis, Planner maximally filtered graph extraction and hub analysis.
| Version: | 0.2.1 |
| Depends: | R (≥ 3.5) |
| Imports: | stats, ggplot2, ggalt, MEGENA, igraph, Hmisc, utils, grDevices, plyr, scales, grid, VennDiagram |
| Suggests: | WGCNA, Biostrings, impute, ggfortify |
| Published: | 2019-06-15 |
| Author: | Kefu Liu [aut, cre] |
| Maintainer: | Kefu Liu <liukefu19 at 163.com> |
| BugReports: | https://github.com/liukf10/DDPNA/issues |
| License: | GPL-2 |
| URL: | http://github.com/liukf10/DDPNA |
| NeedsCompilation: | no |
| Materials: | README |
| CRAN checks: | DDPNA results |
| Reference manual: | DDPNA.pdf |
| Package source: | DDPNA_0.2.1.tar.gz |
| Windows binaries: | r-devel: DDPNA_0.2.1.zip, r-devel-gcc8: DDPNA_0.2.1.zip, r-release: DDPNA_0.2.1.zip, r-oldrel: DDPNA_0.2.1.zip |
| OS X binaries: | r-release: DDPNA_0.2.1.tgz, r-oldrel: DDPNA_0.2.1.tgz |
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