FishResp: Analytical Tool for Aquatic Respirometry

Calculates metabolic rate of fish and other aquatic organisms measured using an intermittent-flow respirometry approach. The tool is used to run a set of graphical QC tests of raw respirometry data, correct it for background respiration and chamber effect, filter and extract target values of absolute and mass-specific metabolic rate. Experimental design should include background respiration tests and measuring of one or more metabolic rate traits. The package allows a user to import raw respirometry data obtained from 'AquaResp' (free software), 'AutoResp' ('LoligoSystems'), 'OxyView' ('PreSens'), 'Pyro Oxygen Logger' ('PyroScience') and 'Q-box Aqua' ('QubitSystems').

Version: 1.0.3
Depends: R (≥ 3.0.0)
Imports: chron, lattice, mclust, rMR, respirometry
Published: 2019-03-07
Author: Sergey Morozov [aut, cre], R.J. Scott McCairns [aut, ths], Federico Calboli [ctb], Juha Merila [ths], Stephen White [dtc], Daniel Montgomery [dtc], Laura Almodovar-Acevedo [dtc], Niclas Kolm [dtc], Alexander Kotrschal [dtc]
Maintainer: Sergey Morozov <sergey.morozov at>
License: GPL-3
NeedsCompilation: no
SystemRequirements: Display resolution >= 1280x800; RAM >= 4GB
Citation: FishResp citation info
CRAN checks: FishResp results


Reference manual: FishResp.pdf
Package source: FishResp_1.0.3.tar.gz
Windows binaries: r-devel:, r-devel-gcc8:, r-release:, r-oldrel:
OS X binaries: r-release: FishResp_1.0.3.tgz, r-oldrel: FishResp_1.0.3.tgz
Old sources: FishResp archive


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