Gene Expression Omnibus(GEO) and The Cancer Genome Atlas (TCGA) provide us with a wealth of data, such as RNA-seq, DNA Methylation, and Copy number variation data. It's easy to download data from TCGA using the gdc tool, but processing these data into a format suitable for bioinformatics analysis requires more work. This R package was developed to handle these data.
| Version: | 0.2.0 |
| Depends: | R (≥ 3.6.0) |
| Imports: | utils, data.table |
| Suggests: | knitr, rmarkdown, DESeq2, S4Vectors |
| Published: | 2019-09-23 |
| Author: | Erqiang Hu [aut, cre] |
| Maintainer: | Erqiang Hu <13766876214 at 163.com> |
| License: | Artistic-2.0 |
| NeedsCompilation: | no |
| Language: | en-US |
| Materials: | README |
| CRAN checks: | GeoTcgaData results |
| Reference manual: | GeoTcgaData.pdf |
| Vignettes: |
GeoTcgaData |
| Package source: | GeoTcgaData_0.2.0.tar.gz |
| Windows binaries: | r-devel: GeoTcgaData_0.2.0.zip, r-devel-gcc8: GeoTcgaData_0.2.0.zip, r-release: GeoTcgaData_0.2.0.zip, r-oldrel: not available |
| OS X binaries: | r-release: GeoTcgaData_0.2.0.tgz, r-oldrel: not available |
| Old sources: | GeoTcgaData archive |
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