GeoTcgaData: Processing various types of data on GEO and TCGA

Gene Expression Omnibus(GEO) and The Cancer Genome Atlas (TCGA) provide us with a wealth of data, such as RNA-seq, DNA Methylation, and Copy number variation data. It's easy to download data from TCGA using the gdc tool, but processing these data into a format suitable for bioinformatics analysis requires more work. This R package was developed to handle these data.

Version: 0.2.0
Depends: R (≥ 3.6.0)
Imports: utils, data.table
Suggests: knitr, rmarkdown, DESeq2, S4Vectors
Published: 2019-09-23
Author: Erqiang Hu [aut, cre]
Maintainer: Erqiang Hu <13766876214 at>
License: Artistic-2.0
NeedsCompilation: no
Language: en-US
Materials: README
CRAN checks: GeoTcgaData results


Reference manual: GeoTcgaData.pdf
Vignettes: GeoTcgaData
Package source: GeoTcgaData_0.2.0.tar.gz
Windows binaries: r-devel:, r-devel-gcc8:, r-release:, r-oldrel: not available
OS X binaries: r-release: GeoTcgaData_0.2.0.tgz, r-oldrel: not available
Old sources: GeoTcgaData archive


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