ML.MSBD: Maximum Likelihood Inference on Multi-State Trees

Inference of a multi-states birth-death model from a phylogeny, comprising a number of states N, birth and death rates for each state and on which edges each state appears. Inference is done using a hybrid approach: states are progressively added in a greedy approach. For a fixed number of states N the best model is selected via maximum likelihood. Reference: J. Barido-Sottani and T. Stadler (2017) <doi:10.1101/215491>.

Version: 1.2.0
Imports: ape (≥ 5.1), foreach
Suggests: knitr, doParallel
Published: 2019-09-26
Author: Joelle Barido-Sottani [aut, cre]
Maintainer: Joelle Barido-Sottani <joelle.barido-sottani at>
License: GPL-3
NeedsCompilation: no
Materials: NEWS
CRAN checks: ML.MSBD results


Reference manual: ML.MSBD.pdf
Vignettes: Using ML.MSBD
Package source: ML.MSBD_1.2.0.tar.gz
Windows binaries: r-devel:, r-devel-gcc8:, r-release:, r-oldrel:
OS X binaries: r-release: ML.MSBD_1.2.0.tgz, r-oldrel: ML.MSBD_1.2.0.tgz
Old sources: ML.MSBD archive


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