| NEWS | R Documentation |
Maintainer email was changed
A typo was fixed in the vingette
For lme models, Thorn Thaler found a bug in some models where the calculaiton of model degrees of freedon could not be determined and proposed a fix.
If the sandwich estimate failed, the traditional covariance estimator is used instead.
Moved to a real NEWS file format.
A bug was fixed (spotted by Thorn Thaler) where normal (not t) distributions were being used with lme and gls models to calculate confidence intervals.
The package was updated to work with the rms package instead of the Design package.
A bug was fixed for generalized linear models with no degrees of freedom, such as log-linear models.
The vignette was slightly reformatted.
An error check was added for lme models that will fail if the covariance
matrix of the variance-covariance coefficients has issues (since lme
counts the number of random effects when calculating degrees of freedom).
With lme, this problem is signaled by lmeObject$apVar being a character
string (eg. "Non-positive definite approximate variance-covariance")
Fixed typo in manual
Added log fold-change transformation
Cleaned up the package vignette a little