intePareto: Integrative Analysis of RNA-Seq and ChIP-Seq Data

Integrative analysis of gene expression (RNA-Seq data), and histone modification data for user-defined sets of histone marks (ChIP-Seq data) to discover consistent changes in genes between biological conditions. Additionally, Pareto optimization is used to prioritize genes based on the level of consistent changes in both RNA-Seq and ChIP-Seq data.

Version: 0.0.1
Depends: R (≥ 3.6.0)
Imports: GenomicRanges, GenomeInfoDb, IRanges, GenomicAlignments, biomaRt, Rsamtools, rPref, DESeq2, apeglm
Suggests: knitr, rmarkdown
Published: 2019-10-09
Author: Yingying Cao [aut, cre]
Maintainer: Yingying Cao <yingying.cao at>
License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
NeedsCompilation: no
CRAN checks: intePareto results


Reference manual: intePareto.pdf
Vignettes: User Manual: intePareto
Package source: intePareto_0.0.1.tar.gz
Windows binaries: r-devel:, r-devel-gcc8:, r-release:, r-oldrel: not available
OS X binaries: r-release: not available, r-oldrel: not available


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