metaboGSE: Gene Set Enrichment Analysis via Integration of Metabolic Networks and RNA-Seq Data

Integrates metabolic networks and RNA-seq data to construct condition-specific series of metabolic sub-networks and applies to gene set enrichment analysis (Tran et al. (2018) <doi:10.1093/bioinformatics/bty929>).

Version: 1.2.1
Depends: R (≥ 3.4.0), sybil (≥ 2.0.4), AnnotationDbi (≥ 1.32.3), ape (≥ 3.3), topGO (≥ 2.24.0)
Imports: utils, stats, methods, parallel, grDevices, graphics, Matrix, sys
Suggests: glpkAPI (≥ 1.3.0), clpAPI (≥ 1.2.7), KernSmooth, KEGGREST, survival, ctc, knitr, rmarkdown
Published: 2018-12-12
Author: Van Du T. Tran [aut, cre], Marco Pagni [aut]
Maintainer: Van Du T. Tran <thuong.tran at>
License: GPL-3
NeedsCompilation: no
Citation: metaboGSE citation info
Materials: NEWS
CRAN checks: metaboGSE results


Reference manual: metaboGSE.pdf
Vignettes: metaboGSE - integrating RNA-seq data and metabolic networks
Package source: metaboGSE_1.2.1.tar.gz
Windows binaries: r-devel:, r-devel-gcc8:, r-release:, r-oldrel:
OS X binaries: r-release: not available, r-oldrel: metaboGSE_1.2.1.tgz
Old sources: metaboGSE archive


Please use the canonical form to link to this page.