Integrates metabolic networks and RNA-seq data to construct condition-specific series of metabolic sub-networks and applies to gene set enrichment analysis (Tran et al. (2018) <doi:10.1093/bioinformatics/bty929>).
| Version: | 1.2.1 |
| Depends: | R (≥ 3.4.0), sybil (≥ 2.0.4), AnnotationDbi (≥ 1.32.3), ape (≥ 3.3), topGO (≥ 2.24.0) |
| Imports: | utils, stats, methods, parallel, grDevices, graphics, Matrix, sys |
| Suggests: | glpkAPI (≥ 1.3.0), clpAPI (≥ 1.2.7), KernSmooth, KEGGREST, survival, ctc, knitr, rmarkdown |
| Published: | 2018-12-12 |
| Author: | Van Du T. Tran [aut, cre], Marco Pagni [aut] |
| Maintainer: | Van Du T. Tran <thuong.tran at sib.swiss> |
| License: | GPL-3 |
| NeedsCompilation: | no |
| Citation: | metaboGSE citation info |
| Materials: | NEWS |
| CRAN checks: | metaboGSE results |
| Reference manual: | metaboGSE.pdf |
| Vignettes: |
metaboGSE - integrating RNA-seq data and metabolic networks |
| Package source: | metaboGSE_1.2.1.tar.gz |
| Windows binaries: | r-devel: metaboGSE_1.2.1.zip, r-devel-gcc8: metaboGSE_1.2.1.zip, r-release: metaboGSE_1.2.1.zip, r-oldrel: metaboGSE_1.2.1.zip |
| OS X binaries: | r-release: not available, r-oldrel: metaboGSE_1.2.1.tgz |
| Old sources: | metaboGSE archive |
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