pcmabc: Approximate Bayesian Computations for Phylogenetic Comparative Methods

Fits by ABC, the parameters of a stochastic process modelling the phylogeny and evolution of a suite of traits following the tree. The user may define an arbitrary Markov process for the trait and phylogeny. Importantly, trait-dependent speciation models are handled and fitted to data. See K. Bartoszek, P. Lio' (2019) <10.5506/APhysPolBSupp.12.25>.

Version: 1.0.4
Depends: R (≥ 2.9.1)
Imports: ape (≥ 3.0.6), distory, geiger, graphics, methods, mvSLOUCH, phangorn, stats, TreeSim, utils, yuima
Published: 2019-04-03
Author: Krzysztof Bartoszek, Pietro Lio'
Maintainer: Krzysztof Bartoszek <krzbar at protonmail.ch>
License: GPL-2 | GPL-3 | file LICENCE [expanded from: GPL (≥ 2) | file LICENCE]
NeedsCompilation: no
Citation: pcmabc citation info
CRAN checks: pcmabc results


Reference manual: pcmabc.pdf
Package source: pcmabc_1.0.4.tar.gz
Windows binaries: r-devel: pcmabc_1.0.4.zip, r-devel-gcc8: pcmabc_1.0.4.zip, r-release: pcmabc_1.0.4.zip, r-oldrel: pcmabc_1.0.4.zip
OS X binaries: r-release: pcmabc_1.0.4.tgz, r-oldrel: pcmabc_1.0.4.tgz
Old sources: pcmabc archive


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