CRAN Package Check Results for Package ActiveDriverWGS

Last updated on 2020-01-20 01:50:14 CET.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.0.1 3.33 327.27 330.60 OK
r-devel-linux-x86_64-debian-gcc 1.0.1 2.94 253.79 256.73 OK
r-devel-linux-x86_64-fedora-clang 1.0.1 392.71 OK
r-devel-linux-x86_64-fedora-gcc 1.0.1 395.70 OK
r-devel-windows-ix86+x86_64 1.0.1 15.00 138.00 153.00 ERROR
r-devel-windows-ix86+x86_64-gcc8 1.0.1 8.00 109.00 117.00 ERROR
r-patched-linux-x86_64 1.0.1 3.27 300.71 303.98 OK
r-patched-solaris-x86 1.0.1 703.50 OK
r-release-linux-x86_64 1.0.1 3.05 307.72 310.77 OK
r-release-windows-ix86+x86_64 1.0.1 12.00 418.00 430.00 OK
r-release-osx-x86_64 1.0.1 ERROR
r-oldrel-windows-ix86+x86_64 1.0.1 3.00 327.00 330.00 OK
r-oldrel-osx-x86_64 1.0.1 ERROR

Check Details

Version: 1.0.1
Check: tests
Result: ERROR
     Running 'testthat.R' [47s]
    Running the tests in 'tests/testthat.R' failed.
    Complete output:
     > library(testthat)
     > library(ActiveDriverWGS)
     >
     > test_check("ActiveDriverWGS")
     -- 1. Error: (unknown) (@test_ADWGS_test.R#7) ---------------------------------
     trying to get slot "className" from an object of a basic class ("character") with no slots
     Backtrace:
     1. GenomicRanges::GRanges(...)
     2. S4Vectors::DataFrame(..., check.names = FALSE)
     3. methods::is(listData[[1L]], getClass("Annotated"))
    
     -- 2. Error: (unknown) (@test_ActiveDriverWGS.R#7) ----------------------------
     trying to get slot "className" from an object of a basic class ("character") with no slots
     Backtrace:
     1. GenomicRanges::GRanges(...)
     2. S4Vectors::DataFrame(..., check.names = FALSE)
     3. methods::is(listData[[1L]], getClass("Annotated"))
    
     reversing 0 positions
     Removing 0 invalid SNVs & indels
    
     reversing 0 positions
     Removing 0 invalid SNVs
    
     28 remove hypermut, n= 58256 , 100 %
     hypermuted samples: 001-0002-03TD 003-0005-09TD 012-02-1TD 125 128 137 141 151 178 192 26 277 282 294 306 308 318 342 343 367 393 467 473 477 519 523 564 CLL4-ARTICLE
    
     0 remove hypermut, n= 0 , 0 %
     hypermuted samples:
    
     0 remove hypermut, n= 0 , 0 %
     hypermuted samples:
    
     reversing 0 positions
     0 remove hypermut, n= 0 , 0 %
     hypermuted samples:
    
     reversing 0 positions
     Removing 0 invalid SNVs & indels
    
     -- 3. Failure: elements are formatted properly (@test_input_format.R#112) -----
     `ActiveDriverWGS(elements = as.matrix(cancer_genes), mutations = cll_mutations)` threw an error with unexpected message.
     Expected match: "elements must be a data frame"
     Actual message: "trying to get slot \"className\" from an object of a basic class (\"character\") with no slots"
     Backtrace:
     1. testthat::expect_error(...)
     6. ActiveDriverWGS::ActiveDriverWGS(...)
     7. GenomicRanges::GRanges(...)
     8. S4Vectors::DataFrame(..., check.names = FALSE)
     9. methods::is(listData[[1L]], getClass("Annotated"))
    
     0 remove hypermut, n= 0 , 0 %
     hypermuted samples:
    
     reversing 0 positions
     Removing 0 invalid SNVs & indels
    
     -- 4. Failure: elements are formatted properly (@test_input_format.R#117) -----
     `ActiveDriverWGS(elements = cancer_genes[, 1:3], mutations = cll_mutations)` threw an error with unexpected message.
     Expected match: "elements must contain the following columns: chr, start, end & id"
     Actual message: "trying to get slot \"className\" from an object of a basic class (\"character\") with no slots"
     Backtrace:
     1. testthat::expect_error(...)
     6. ActiveDriverWGS::ActiveDriverWGS(...)
     7. GenomicRanges::GRanges(...)
     8. S4Vectors::DataFrame(..., check.names = FALSE)
     9. methods::is(listData[[1L]], getClass("Annotated"))
    
     0 remove hypermut, n= 0 , 0 %
     hypermuted samples:
    
     reversing 0 positions
     Removing 0 invalid SNVs & indels
    
     -- 5. Failure: elements are formatted properly (@test_input_format.R#124) -----
     `ActiveDriverWGS(elements = this_elements, mutations = cll_mutations)` threw an error with unexpected message.
     Expected match: "elements may not contain missing values"
     Actual message: "trying to get slot \"className\" from an object of a basic class (\"character\") with no slots"
     Backtrace:
     1. testthat::expect_error(...)
     6. ActiveDriverWGS::ActiveDriverWGS(elements = this_elements, mutations = cll_mutations)
     7. GenomicRanges::GRanges(...)
     8. S4Vectors::DataFrame(..., check.names = FALSE)
     9. methods::is(listData[[1L]], getClass("Annotated"))
    
     0 remove hypermut, n= 0 , 0 %
     hypermuted samples:
    
     reversing 0 positions
     Removing 0 invalid SNVs & indels
    
     -- 6. Failure: elements are formatted properly (@test_input_format.R#130) -----
     `ActiveDriverWGS(elements = this_elements, mutations = cll_mutations)` threw an error with unexpected message.
     Expected match: "duplicated elements are present. please review your format"
     Actual message: "trying to get slot \"className\" from an object of a basic class (\"character\") with no slots"
     Backtrace:
     1. testthat::expect_error(...)
     6. ActiveDriverWGS::ActiveDriverWGS(elements = this_elements, mutations = cll_mutations)
     7. GenomicRanges::GRanges(...)
     8. S4Vectors::DataFrame(..., check.names = FALSE)
     9. methods::is(listData[[1L]], getClass("Annotated"))
    
     0 remove hypermut, n= 0 , 0 %
     hypermuted samples:
    
     reversing 0 positions
     Removing 0 invalid SNVs & indels
    
     -- 7. Failure: elements are formatted properly (@test_input_format.R#137) -----
     `ActiveDriverWGS(elements = this_elements, mutations = cll_mutations)` threw an error with unexpected message.
     Expected match: "start and end must be numeric"
     Actual message: "trying to get slot \"className\" from an object of a basic class (\"character\") with no slots"
     Backtrace:
     1. testthat::expect_error(...)
     6. ActiveDriverWGS::ActiveDriverWGS(elements = this_elements, mutations = cll_mutations)
     7. GenomicRanges::GRanges(...)
     8. S4Vectors::DataFrame(..., check.names = FALSE)
     9. methods::is(listData[[1L]], getClass("Annotated"))
    
     0 remove hypermut, n= 0 , 0 %
     hypermuted samples:
    
     reversing 0 positions
     Removing 0 invalid SNVs & indels
    
     -- 8. Failure: elements are formatted properly (@test_input_format.R#144) -----
     `ActiveDriverWGS(elements = this_elements, mutations = cll_mutations)` threw an error with unexpected message.
     Expected match: "element identifier must be a string"
     Actual message: "trying to get slot \"className\" from an object of a basic class (\"character\") with no slots"
     Backtrace:
     1. testthat::expect_error(...)
     6. ActiveDriverWGS::ActiveDriverWGS(elements = this_elements, mutations = cll_mutations)
     7. GenomicRanges::GRanges(...)
     8. S4Vectors::DataFrame(..., check.names = FALSE)
     9. methods::is(listData[[1L]], getClass("Annotated"))
    
     0 remove hypermut, n= 0 , 0 %
     hypermuted samples:
    
     reversing 0 positions
     Removing 0 invalid SNVs & indels
    
     -- 9. Failure: sites are formatted properly (@test_input_format.R#152) --------
     `ActiveDriverWGS(...)` threw an error with unexpected message.
     Expected match: "sites must be a data frame"
     Actual message: "trying to get slot \"className\" from an object of a basic class (\"character\") with no slots"
     Backtrace:
     1. testthat::expect_error(...)
     6. ActiveDriverWGS::ActiveDriverWGS(...)
     7. GenomicRanges::GRanges(...)
     8. S4Vectors::DataFrame(..., check.names = FALSE)
     9. methods::is(listData[[1L]], getClass("Annotated"))
    
     0 remove hypermut, n= 0 , 0 %
     hypermuted samples:
    
     reversing 0 positions
     Removing 0 invalid SNVs & indels
    
     -- 10. Failure: sites are formatted properly (@test_input_format.R#158) -------
     `ActiveDriverWGS(...)` threw an error with unexpected message.
     Expected match: "sites must contain the following columns: chr, start, end & id"
     Actual message: "trying to get slot \"className\" from an object of a basic class (\"character\") with no slots"
     Backtrace:
     1. testthat::expect_error(...)
     6. ActiveDriverWGS::ActiveDriverWGS(...)
     7. GenomicRanges::GRanges(...)
     8. S4Vectors::DataFrame(..., check.names = FALSE)
     9. methods::is(listData[[1L]], getClass("Annotated"))
    
     0 remove hypermut, n= 0 , 0 %
     hypermuted samples:
    
     reversing 0 positions
     Removing 0 invalid SNVs & indels
    
     -- 11. Failure: sites are formatted properly (@test_input_format.R#167) -------
     `ActiveDriverWGS(...)` threw an error with unexpected message.
     Expected match: "sites may not contain missing values"
     Actual message: "trying to get slot \"className\" from an object of a basic class (\"character\") with no slots"
     Backtrace:
     1. testthat::expect_error(...)
     6. ActiveDriverWGS::ActiveDriverWGS(...)
     7. GenomicRanges::GRanges(...)
     8. S4Vectors::DataFrame(..., check.names = FALSE)
     9. methods::is(listData[[1L]], getClass("Annotated"))
    
     0 remove hypermut, n= 0 , 0 %
     hypermuted samples:
    
     reversing 0 positions
     Removing 0 invalid SNVs & indels
    
     -- 12. Failure: sites are formatted properly (@test_input_format.R#174) -------
     `ActiveDriverWGS(...)` threw an error with unexpected message.
     Expected match: "duplicated sites are present. please review your format"
     Actual message: "trying to get slot \"className\" from an object of a basic class (\"character\") with no slots"
     Backtrace:
     1. testthat::expect_error(...)
     6. ActiveDriverWGS::ActiveDriverWGS(...)
     7. GenomicRanges::GRanges(...)
     8. S4Vectors::DataFrame(..., check.names = FALSE)
     9. methods::is(listData[[1L]], getClass("Annotated"))
    
     0 remove hypermut, n= 0 , 0 %
     hypermuted samples:
    
     reversing 0 positions
     Removing 0 invalid SNVs & indels
    
     -- 13. Failure: sites are formatted properly (@test_input_format.R#182) -------
     `ActiveDriverWGS(...)` threw an error with unexpected message.
     Expected match: "start and end must be numeric"
     Actual message: "trying to get slot \"className\" from an object of a basic class (\"character\") with no slots"
     Backtrace:
     1. testthat::expect_error(...)
     6. ActiveDriverWGS::ActiveDriverWGS(...)
     7. GenomicRanges::GRanges(...)
     8. S4Vectors::DataFrame(..., check.names = FALSE)
     9. methods::is(listData[[1L]], getClass("Annotated"))
    
     0 remove hypermut, n= 0 , 0 %
     hypermuted samples:
    
     reversing 0 positions
     Removing 0 invalid SNVs & indels
    
     -- 14. Failure: sites are formatted properly (@test_input_format.R#190) -------
     `ActiveDriverWGS(...)` threw an error with unexpected message.
     Expected match: "site identifier must be a string"
     Actual message: "trying to get slot \"className\" from an object of a basic class (\"character\") with no slots"
     Backtrace:
     1. testthat::expect_error(...)
     6. ActiveDriverWGS::ActiveDriverWGS(...)
     7. GenomicRanges::GRanges(...)
     8. S4Vectors::DataFrame(..., check.names = FALSE)
     9. methods::is(listData[[1L]], getClass("Annotated"))
    
    
     1189 Rows :: Processing row 100 200 300 400 500 600 700 800 900 1000 1100
     Preparing Elements Complete
     RM 0 lines
    
     5 Rows :: Processing row
     5 Rows :: Processing row
     5 Rows :: Processing row == testthat results ===========================================================
     [ OK: 48 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 14 ]
     1. Error: (unknown) (@test_ADWGS_test.R#7)
     2. Error: (unknown) (@test_ActiveDriverWGS.R#7)
     3. Failure: elements are formatted properly (@test_input_format.R#112)
     4. Failure: elements are formatted properly (@test_input_format.R#117)
     5. Failure: elements are formatted properly (@test_input_format.R#124)
     6. Failure: elements are formatted properly (@test_input_format.R#130)
     7. Failure: elements are formatted properly (@test_input_format.R#137)
     8. Failure: elements are formatted properly (@test_input_format.R#144)
     9. Failure: sites are formatted properly (@test_input_format.R#152)
     1. ...
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-devel-windows-ix86+x86_64

Version: 1.0.1
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
    --- re-building 'ActiveDriverWGSR.Rmd' using rmarkdown
    Quitting from lines 109-116 (ActiveDriverWGSR.Rmd)
    Error: processing vignette 'ActiveDriverWGSR.Rmd' failed with diagnostics:
    trying to get slot "className" from an object of a basic class ("character") with no slots
    --- failed re-building 'ActiveDriverWGSR.Rmd'
    
    SUMMARY: processing the following file failed:
     'ActiveDriverWGSR.Rmd'
    
    Error: Vignette re-building failed.
    Execution halted
Flavor: r-devel-windows-ix86+x86_64

Version: 1.0.1
Check: tests
Result: ERROR
     Running 'testthat.R' [38s]
    Running the tests in 'tests/testthat.R' failed.
    Complete output:
     > library(testthat)
     > library(ActiveDriverWGS)
     >
     > test_check("ActiveDriverWGS")
     -- 1. Error: (unknown) (@test_ADWGS_test.R#7) ---------------------------------
     trying to get slot "className" from an object of a basic class ("character") with no slots
     Backtrace:
     1. GenomicRanges::GRanges(...)
     2. S4Vectors::DataFrame(..., check.names = FALSE)
     3. methods::is(listData[[1L]], getClass("Annotated"))
    
     -- 2. Error: (unknown) (@test_ActiveDriverWGS.R#7) ----------------------------
     trying to get slot "className" from an object of a basic class ("character") with no slots
     Backtrace:
     1. GenomicRanges::GRanges(...)
     2. S4Vectors::DataFrame(..., check.names = FALSE)
     3. methods::is(listData[[1L]], getClass("Annotated"))
    
     reversing 0 positions
     Removing 0 invalid SNVs & indels
    
     reversing 0 positions
     Removing 0 invalid SNVs
    
     28 remove hypermut, n= 58256 , 100 %
     hypermuted samples: 001-0002-03TD 003-0005-09TD 012-02-1TD 125 128 137 141 151 178 192 26 277 282 294 306 308 318 342 343 367 393 467 473 477 519 523 564 CLL4-ARTICLE
    
     0 remove hypermut, n= 0 , 0 %
     hypermuted samples:
    
     0 remove hypermut, n= 0 , 0 %
     hypermuted samples:
    
     reversing 0 positions
     0 remove hypermut, n= 0 , 0 %
     hypermuted samples:
    
     reversing 0 positions
     Removing 0 invalid SNVs & indels
    
     -- 3. Failure: elements are formatted properly (@test_input_format.R#112) -----
     `ActiveDriverWGS(elements = as.matrix(cancer_genes), mutations = cll_mutations)` threw an error with unexpected message.
     Expected match: "elements must be a data frame"
     Actual message: "trying to get slot \"className\" from an object of a basic class (\"character\") with no slots"
     Backtrace:
     1. testthat::expect_error(...)
     6. ActiveDriverWGS::ActiveDriverWGS(...)
     7. GenomicRanges::GRanges(...)
     8. S4Vectors::DataFrame(..., check.names = FALSE)
     9. methods::is(listData[[1L]], getClass("Annotated"))
    
     0 remove hypermut, n= 0 , 0 %
     hypermuted samples:
    
     reversing 0 positions
     Removing 0 invalid SNVs & indels
    
     -- 4. Failure: elements are formatted properly (@test_input_format.R#117) -----
     `ActiveDriverWGS(elements = cancer_genes[, 1:3], mutations = cll_mutations)` threw an error with unexpected message.
     Expected match: "elements must contain the following columns: chr, start, end & id"
     Actual message: "trying to get slot \"className\" from an object of a basic class (\"character\") with no slots"
     Backtrace:
     1. testthat::expect_error(...)
     6. ActiveDriverWGS::ActiveDriverWGS(...)
     7. GenomicRanges::GRanges(...)
     8. S4Vectors::DataFrame(..., check.names = FALSE)
     9. methods::is(listData[[1L]], getClass("Annotated"))
    
     0 remove hypermut, n= 0 , 0 %
     hypermuted samples:
    
     reversing 0 positions
     Removing 0 invalid SNVs & indels
    
     -- 5. Failure: elements are formatted properly (@test_input_format.R#124) -----
     `ActiveDriverWGS(elements = this_elements, mutations = cll_mutations)` threw an error with unexpected message.
     Expected match: "elements may not contain missing values"
     Actual message: "trying to get slot \"className\" from an object of a basic class (\"character\") with no slots"
     Backtrace:
     1. testthat::expect_error(...)
     6. ActiveDriverWGS::ActiveDriverWGS(elements = this_elements, mutations = cll_mutations)
     7. GenomicRanges::GRanges(...)
     8. S4Vectors::DataFrame(..., check.names = FALSE)
     9. methods::is(listData[[1L]], getClass("Annotated"))
    
     0 remove hypermut, n= 0 , 0 %
     hypermuted samples:
    
     reversing 0 positions
     Removing 0 invalid SNVs & indels
    
     -- 6. Failure: elements are formatted properly (@test_input_format.R#130) -----
     `ActiveDriverWGS(elements = this_elements, mutations = cll_mutations)` threw an error with unexpected message.
     Expected match: "duplicated elements are present. please review your format"
     Actual message: "trying to get slot \"className\" from an object of a basic class (\"character\") with no slots"
     Backtrace:
     1. testthat::expect_error(...)
     6. ActiveDriverWGS::ActiveDriverWGS(elements = this_elements, mutations = cll_mutations)
     7. GenomicRanges::GRanges(...)
     8. S4Vectors::DataFrame(..., check.names = FALSE)
     9. methods::is(listData[[1L]], getClass("Annotated"))
    
     0 remove hypermut, n= 0 , 0 %
     hypermuted samples:
    
     reversing 0 positions
     Removing 0 invalid SNVs & indels
    
     -- 7. Failure: elements are formatted properly (@test_input_format.R#137) -----
     `ActiveDriverWGS(elements = this_elements, mutations = cll_mutations)` threw an error with unexpected message.
     Expected match: "start and end must be numeric"
     Actual message: "trying to get slot \"className\" from an object of a basic class (\"character\") with no slots"
     Backtrace:
     1. testthat::expect_error(...)
     6. ActiveDriverWGS::ActiveDriverWGS(elements = this_elements, mutations = cll_mutations)
     7. GenomicRanges::GRanges(...)
     8. S4Vectors::DataFrame(..., check.names = FALSE)
     9. methods::is(listData[[1L]], getClass("Annotated"))
    
     0 remove hypermut, n= 0 , 0 %
     hypermuted samples:
    
     reversing 0 positions
     Removing 0 invalid SNVs & indels
    
     -- 8. Failure: elements are formatted properly (@test_input_format.R#144) -----
     `ActiveDriverWGS(elements = this_elements, mutations = cll_mutations)` threw an error with unexpected message.
     Expected match: "element identifier must be a string"
     Actual message: "trying to get slot \"className\" from an object of a basic class (\"character\") with no slots"
     Backtrace:
     1. testthat::expect_error(...)
     6. ActiveDriverWGS::ActiveDriverWGS(elements = this_elements, mutations = cll_mutations)
     7. GenomicRanges::GRanges(...)
     8. S4Vectors::DataFrame(..., check.names = FALSE)
     9. methods::is(listData[[1L]], getClass("Annotated"))
    
     0 remove hypermut, n= 0 , 0 %
     hypermuted samples:
    
     reversing 0 positions
     Removing 0 invalid SNVs & indels
    
     -- 9. Failure: sites are formatted properly (@test_input_format.R#152) --------
     `ActiveDriverWGS(...)` threw an error with unexpected message.
     Expected match: "sites must be a data frame"
     Actual message: "trying to get slot \"className\" from an object of a basic class (\"character\") with no slots"
     Backtrace:
     1. testthat::expect_error(...)
     6. ActiveDriverWGS::ActiveDriverWGS(...)
     7. GenomicRanges::GRanges(...)
     8. S4Vectors::DataFrame(..., check.names = FALSE)
     9. methods::is(listData[[1L]], getClass("Annotated"))
    
     0 remove hypermut, n= 0 , 0 %
     hypermuted samples:
    
     reversing 0 positions
     Removing 0 invalid SNVs & indels
    
     -- 10. Failure: sites are formatted properly (@test_input_format.R#158) -------
     `ActiveDriverWGS(...)` threw an error with unexpected message.
     Expected match: "sites must contain the following columns: chr, start, end & id"
     Actual message: "trying to get slot \"className\" from an object of a basic class (\"character\") with no slots"
     Backtrace:
     1. testthat::expect_error(...)
     6. ActiveDriverWGS::ActiveDriverWGS(...)
     7. GenomicRanges::GRanges(...)
     8. S4Vectors::DataFrame(..., check.names = FALSE)
     9. methods::is(listData[[1L]], getClass("Annotated"))
    
     0 remove hypermut, n= 0 , 0 %
     hypermuted samples:
    
     reversing 0 positions
     Removing 0 invalid SNVs & indels
    
     -- 11. Failure: sites are formatted properly (@test_input_format.R#167) -------
     `ActiveDriverWGS(...)` threw an error with unexpected message.
     Expected match: "sites may not contain missing values"
     Actual message: "trying to get slot \"className\" from an object of a basic class (\"character\") with no slots"
     Backtrace:
     1. testthat::expect_error(...)
     6. ActiveDriverWGS::ActiveDriverWGS(...)
     7. GenomicRanges::GRanges(...)
     8. S4Vectors::DataFrame(..., check.names = FALSE)
     9. methods::is(listData[[1L]], getClass("Annotated"))
    
     0 remove hypermut, n= 0 , 0 %
     hypermuted samples:
    
     reversing 0 positions
     Removing 0 invalid SNVs & indels
    
     -- 12. Failure: sites are formatted properly (@test_input_format.R#174) -------
     `ActiveDriverWGS(...)` threw an error with unexpected message.
     Expected match: "duplicated sites are present. please review your format"
     Actual message: "trying to get slot \"className\" from an object of a basic class (\"character\") with no slots"
     Backtrace:
     1. testthat::expect_error(...)
     6. ActiveDriverWGS::ActiveDriverWGS(...)
     7. GenomicRanges::GRanges(...)
     8. S4Vectors::DataFrame(..., check.names = FALSE)
     9. methods::is(listData[[1L]], getClass("Annotated"))
    
     0 remove hypermut, n= 0 , 0 %
     hypermuted samples:
    
     reversing 0 positions
     Removing 0 invalid SNVs & indels
    
     -- 13. Failure: sites are formatted properly (@test_input_format.R#182) -------
     `ActiveDriverWGS(...)` threw an error with unexpected message.
     Expected match: "start and end must be numeric"
     Actual message: "trying to get slot \"className\" from an object of a basic class (\"character\") with no slots"
     Backtrace:
     1. testthat::expect_error(...)
     6. ActiveDriverWGS::ActiveDriverWGS(...)
     7. GenomicRanges::GRanges(...)
     8. S4Vectors::DataFrame(..., check.names = FALSE)
     9. methods::is(listData[[1L]], getClass("Annotated"))
    
     0 remove hypermut, n= 0 , 0 %
     hypermuted samples:
    
     reversing 0 positions
     Removing 0 invalid SNVs & indels
    
     -- 14. Failure: sites are formatted properly (@test_input_format.R#190) -------
     `ActiveDriverWGS(...)` threw an error with unexpected message.
     Expected match: "site identifier must be a string"
     Actual message: "trying to get slot \"className\" from an object of a basic class (\"character\") with no slots"
     Backtrace:
     1. testthat::expect_error(...)
     6. ActiveDriverWGS::ActiveDriverWGS(...)
     7. GenomicRanges::GRanges(...)
     8. S4Vectors::DataFrame(..., check.names = FALSE)
     9. methods::is(listData[[1L]], getClass("Annotated"))
    
    
     1189 Rows :: Processing row 100 200 300 400 500 600 700 800 900 1000 1100
     Preparing Elements Complete
     RM 0 lines
    
     5 Rows :: Processing row
     5 Rows :: Processing row
     5 Rows :: Processing row == testthat results ===========================================================
     [ OK: 48 | SKIPPED: 0 | WARNINGS: 1 | FAILED: 14 ]
     1. Error: (unknown) (@test_ADWGS_test.R#7)
     2. Error: (unknown) (@test_ActiveDriverWGS.R#7)
     3. Failure: elements are formatted properly (@test_input_format.R#112)
     4. Failure: elements are formatted properly (@test_input_format.R#117)
     5. Failure: elements are formatted properly (@test_input_format.R#124)
     6. Failure: elements are formatted properly (@test_input_format.R#130)
     7. Failure: elements are formatted properly (@test_input_format.R#137)
     8. Failure: elements are formatted properly (@test_input_format.R#144)
     9. Failure: sites are formatted properly (@test_input_format.R#152)
     1. ...
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-devel-windows-ix86+x86_64-gcc8

Version: 1.0.1
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
    --- re-building 'ActiveDriverWGSR.Rmd' using rmarkdown
    Warning: replacing previous import 'GenomicRanges::.__C__GenomicRanges_OR_GenomicRangesList' by 'rtracklayer::.__C__GenomicRanges_OR_GenomicRangesList' when loading 'BSgenome'
    Quitting from lines 109-116 (ActiveDriverWGSR.Rmd)
    Error: processing vignette 'ActiveDriverWGSR.Rmd' failed with diagnostics:
    trying to get slot "className" from an object of a basic class ("character") with no slots
    --- failed re-building 'ActiveDriverWGSR.Rmd'
    
    SUMMARY: processing the following file failed:
     'ActiveDriverWGSR.Rmd'
    
    Error: Vignette re-building failed.
    Execution halted
Flavor: r-devel-windows-ix86+x86_64-gcc8

Version: 1.0.1
Check: package dependencies
Result: ERROR
    Package required but not available: ‘BSgenome.Hsapiens.UCSC.hg19’
    
    See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
    manual.
Flavor: r-release-osx-x86_64

Version: 1.0.1
Check: package dependencies
Result: ERROR
    Packages required but not available:
     ‘BSgenome’ ‘BSgenome.Hsapiens.UCSC.hg19’
    
    See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
    manual.
Flavor: r-oldrel-osx-x86_64