Last updated on 2020-01-20 01:50:36 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.1.3 | 4.03 | 92.78 | 96.81 | NOTE | |
| r-devel-linux-x86_64-debian-gcc | 0.1.3 | 3.43 | 68.32 | 71.75 | NOTE | |
| r-devel-linux-x86_64-fedora-clang | 0.1.3 | 110.24 | NOTE | |||
| r-devel-linux-x86_64-fedora-gcc | 0.1.3 | 117.43 | NOTE | |||
| r-devel-windows-ix86+x86_64 | 0.1.3 | 12.00 | 134.00 | 146.00 | NOTE | |
| r-devel-windows-ix86+x86_64-gcc8 | 0.1.3 | 11.00 | 110.00 | 121.00 | NOTE | |
| r-patched-linux-x86_64 | 0.1.3 | 2.63 | 79.37 | 82.00 | NOTE | |
| r-patched-solaris-x86 | 0.1.3 | 86.30 | WARN | |||
| r-release-linux-x86_64 | 0.1.3 | 2.91 | 78.56 | 81.47 | NOTE | |
| r-release-windows-ix86+x86_64 | 0.1.3 | 13.00 | 110.00 | 123.00 | NOTE | |
| r-release-osx-x86_64 | 0.1.3 | WARN | ||||
| r-oldrel-windows-ix86+x86_64 | 0.1.3 | 5.00 | 119.00 | 124.00 | NOTE | |
| r-oldrel-osx-x86_64 | 0.1.3 | WARN |
Version: 0.1.3
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: 'r2cytoscape'
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-devel-windows-ix86+x86_64-gcc8, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64
Version: 0.1.3
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
...
--- re-building ‘SourceSet.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
Loading required package: graph
Loading required package: BiocGenerics
Loading required package: parallel
Attaching package: 'BiocGenerics'
The following objects are masked from 'package:parallel':
clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
clusterExport, clusterMap, parApply, parCapply, parLapply,
parLapplyLB, parRapply, parSapply, parSapplyLB
The following objects are masked from 'package:stats':
IQR, mad, sd, var, xtabs
The following objects are masked from 'package:base':
Filter, Find, Map, Position, Reduce, anyDuplicated, append,
as.data.frame, basename, cbind, colnames, dirname, do.call,
duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin,
pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table,
tapply, union, unique, unsplit, which, which.max, which.min
Identifing all possible orderings..
Total run time: 3.39 secs
Identifing all possible orderings..
Total run time: 1.41 secs
Quitting from lines 346-347 (SourceSet.Rmd)
Error: processing vignette 'SourceSet.Rmd' failed with diagnostics:
there is no package called 'webshot'
--- failed re-building ‘SourceSet.Rmd’
SUMMARY: processing the following file failed:
‘SourceSet.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-patched-solaris-x86
Version: 0.1.3
Check: package dependencies
Result: NOTE
Packages suggested but not available for checking:
'r2cytoscape', 'BiocStyle', 'hgu95av2.db', 'ALL', 'org.Hs.eg.db'
Flavor: r-release-osx-x86_64
Version: 0.1.3
Check: Rd cross-references
Result: NOTE
Package unavailable to check Rd xrefs: ‘ALL’
Flavor: r-release-osx-x86_64
Version: 0.1.3
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
--- re-building ‘SourceSet.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
Loading required package: graph
Loading required package: BiocGenerics
Loading required package: parallel
Attaching package: 'BiocGenerics'
The following objects are masked from 'package:parallel':
clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
clusterExport, clusterMap, parApply, parCapply, parLapply,
parLapplyLB, parRapply, parSapply, parSapplyLB
The following objects are masked from 'package:stats':
IQR, mad, sd, var, xtabs
The following objects are masked from 'package:base':
Filter, Find, Map, Position, Reduce, anyDuplicated, append,
as.data.frame, basename, cbind, colnames, dirname, do.call,
duplicated, eval, evalq, get, grep, grepl, intersect,
is.unsorted, lapply, mapply, match, mget, order, paste, pmax,
pmax.int, pmin, pmin.int, rank, rbind, rownames, sapply,
setdiff, sort, table, tapply, union, unique, unsplit, which,
which.max, which.min
Identifing all possible orderings..
Total run time: 1.46 secs
Identifing all possible orderings..
Total run time: 0.79 secs
PhantomJS not found. You can install it with webshot::install_phantomjs(). If it is installed, please make sure the phantomjs executable can be found via the PATH variable.
Warning in normalizePath(f2) :
path[1]="webshot1036025ae8906.png": No such file or directory
Warning in file(con, "rb") :
cannot open file 'webshot1036025ae8906.png': No such file or directory
Quitting from lines 346-347 (SourceSet.Rmd)
Error: processing vignette 'SourceSet.Rmd' failed with diagnostics:
cannot open the connection
--- failed re-building ‘SourceSet.Rmd’
SUMMARY: processing the following file failed:
‘SourceSet.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-release-osx-x86_64
Version: 0.1.3
Check: package dependencies
Result: NOTE
Packages suggested but not available for checking:
‘r2cytoscape’ ‘BiocStyle’ ‘graphite’ ‘hgu95av2.db’
Flavor: r-oldrel-osx-x86_64
Version: 0.1.3
Check: Rd cross-references
Result: NOTE
Package unavailable to check Rd xrefs: ‘graphite’
Flavor: r-oldrel-osx-x86_64
Version: 0.1.3
Check: re-building of vignette outputs
Result: WARN
Error in re-building vignettes:
...
IQR, mad, sd, var, xtabs
The following objects are masked from 'package:base':
Filter, Find, Map, Position, Reduce, anyDuplicated, append,
as.data.frame, basename, cbind, colMeans, colSums, colnames,
dirname, do.call, duplicated, eval, evalq, get, grep, grepl,
intersect, is.unsorted, lapply, lengths, mapply, match, mget,
order, paste, pmax, pmax.int, pmin, pmin.int, rank, rbind,
rowMeans, rowSums, rownames, sapply, setdiff, sort, table,
tapply, union, unique, unsplit, which, which.max, which.min
Identifing all possible orderings..
Total run time: 1.42 secs
Identifing all possible orderings..
Total run time: 0.88 secs
PhantomJS not found. You can install it with webshot::install_phantomjs(). If it is installed, please make sure the phantomjs executable can be found via the PATH variable.
Warning in normalizePath(f2) :
path[1]="webshotaa8d67b04631.png": No such file or directory
Warning in file(con, "rb") :
cannot open file 'webshotaa8d67b04631.png': No such file or directory
Quitting from lines 346-347 (SourceSet.Rmd)
Error: processing vignette 'SourceSet.Rmd' failed with diagnostics:
cannot open the connection
Execution halted
Flavor: r-oldrel-osx-x86_64