CRAN Package Check Results for Package afex

Last updated on 2020-01-20 01:50:15 CET.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.26-0 13.21 412.24 425.45 OK
r-devel-linux-x86_64-debian-gcc 0.26-0 13.83 304.19 318.02 OK
r-devel-linux-x86_64-fedora-clang 0.26-0 491.94 OK
r-devel-linux-x86_64-fedora-gcc 0.26-0 499.67 OK
r-devel-windows-ix86+x86_64 0.25-1 55.00 563.00 618.00 ERROR
r-devel-windows-ix86+x86_64-gcc8 0.26-0 47.00 574.00 621.00 OK
r-patched-linux-x86_64 0.26-0 11.09 368.33 379.42 OK
r-patched-solaris-x86 0.26-0 838.90 NOTE
r-release-linux-x86_64 0.26-0 14.20 364.01 378.21 OK
r-release-windows-ix86+x86_64 0.26-0 44.00 564.00 608.00 OK
r-release-osx-x86_64 0.26-0 OK
r-oldrel-windows-ix86+x86_64 0.26-0 20.00 406.00 426.00 OK
r-oldrel-osx-x86_64 0.26-0 OK

Check Details

Version: 0.25-1
Check: tests
Result: ERROR
     Running 'testthat.R' [182s]
    Running the tests in 'tests/testthat.R' failed.
    Complete output:
     > library(testthat)
     > library(afex)
     Loading required package: lme4
     Loading required package: Matrix
     ************
     Welcome to afex. For support visit: http://afex.singmann.science/
     - Functions for ANOVAs: aov_car(), aov_ez(), and aov_4()
     - Methods for calculating p-values with mixed(): 'KR', 'S', 'LRT', and 'PB'
     - 'afex_aov' and 'mixed' objects can be passed to emmeans() for follow-up tests
     - NEWS: library('emmeans') now needs to be called explicitly!
     - Get and set global package options with: afex_options()
     - Set orthogonal sum-to-zero contrasts globally: set_sum_contrasts()
     - For example analyses see: browseVignettes("afex")
     ************
    
     Attaching package: 'afex'
    
     The following object is masked from 'package:lme4':
    
     lmer
    
     >
     > test_check("afex")
     -- 1. Error: aov_ez works with multiple covariates (@test-aov_car-bugs.R#237) -
     object 'msq' not found
    
     Mixed Model Anova Table (Type 3 tests, KR-method)
    
     Model: value ~ treatment + (1 | id)
     Data: obk.long
     Effect df F p.value
     1 treatment 2, 13 2.91 + .09
     ---
     Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '+' 0.1 ' ' 1
     Mixed Model Anova Table (Type 3 tests, KR-method)
    
     Model: value ~ treatment + phase + (1 | id)
     Data: obk.long
     Effect df F p.value
     1 treatment 2, 13 2.91 + .09
     2 phase 2, 222 38.48 *** <.0001
     ---
     Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '+' 0.1 ' ' 1
     Mixed Model Anova Table (Type 3 tests, LRT-method)
    
     Model: value ~ treatment + (1 | id)
     Data: obk.long
     Df full model: 5
     Effect df Chisq p.value
     1 treatment 2 5.93 + .05
     ---
     Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '+' 0.1 ' ' 1
     Mixed Model Anova Table (Type 3 tests, LRT-method)
    
     Model: value ~ treatment + phase + (1 | id)
     Data: obk.long
     Df full model: 7
     Effect df Chisq p.value
     1 treatment 2 5.93 + .05
     2 phase 2 66.67 *** <.0001
     ---
     Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '+' 0.1 ' ' 1
     Mixed Model Anova Table (Type 3 tests, PB-method)
    
     Model: use ~ urban + (1 | district)
     Data: Contraception
     Effect df Chisq p.value
     1 urban 1 31.28 .33
     ---
     Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '+' 0.1 ' ' 1
     Mixed Model Anova Table (Type 3 tests, PB-method)
    
     Model: use ~ urban + livch + (1 | district)
     Data: Contraception
     Effect df Chisq p.value
     1 urban 1 36.33 .33
     2 livch 3 77.91 .33
     ---
     Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '+' 0.1 ' ' 1
     == testthat results ===========================================================
     [ OK: 356 | SKIPPED: 10 | WARNINGS: 6 | FAILED: 1 ]
     1. Error: aov_ez works with multiple covariates (@test-aov_car-bugs.R#237)
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-devel-windows-ix86+x86_64

Version: 0.26-0
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: ‘rstanarm’
Flavor: r-patched-solaris-x86

Version: 0.26-0
Check: installed package size
Result: NOTE
     installed size is 5.6Mb
     sub-directories of 1Mb or more:
     doc 2.9Mb
     extdata 1.9Mb
Flavor: r-patched-solaris-x86