CRAN Package Check Results for Maintainer ‘Carl Boettiger <cboettig at gmail.com>’

Last updated on 2020-01-20 01:50:47 CET.

Package FAIL ERROR WARN NOTE OK
arkdb 8 5
codemetar 5 8
EcoNetGen 13
EML 13
emld 13
knitcitations 13
piggyback 13
pmc 1 1 11
rdflib 3 10
rfigshare 13
rfishbase 5 8
RNeXML 13
treebase 13
virtuoso 3 10

Package arkdb

Current CRAN status: NOTE: 8, OK: 5

Version: 0.0.5
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: 'MonetDBLite'
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64-gcc8, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64

Package codemetar

Current CRAN status: NOTE: 5, OK: 8

Version: 0.1.8
Check: dependencies in R code
Result: NOTE
    Namespace in Imports field not imported from: ‘memoise’
     All declared Imports should be used.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-solaris-x86, r-release-osx-x86_64, r-oldrel-osx-x86_64

Package EcoNetGen

Current CRAN status: OK: 13

Package EML

Current CRAN status: OK: 13

Package emld

Current CRAN status: OK: 13

Package knitcitations

Current CRAN status: OK: 13

Package piggyback

Current CRAN status: OK: 13

Package pmc

Current CRAN status: FAIL: 1, WARN: 1, OK: 11

Version: 1.0.3
Check: package dependencies
Result: WARN
    Requires orphaned package: ‘geiger’
Flavor: r-devel-linux-x86_64-fedora-clang

Version: 1.0.3
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
    --- re-building ‘pmc_tutorial.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    Loading required package: ape
    Loading required package: subplex
    
    Attaching package: 'dplyr'
    
    The following objects are masked from 'package:stats':
    
     filter, lag
    
    The following objects are masked from 'package:base':
    
     intersect, setdiff, setequal, union
    
    
    Attaching package: 'gridExtra'
    
    The following object is masked from 'package:dplyr':
    
     combine
    
    Warning in fitContinuous(phy = att$cache$phy, model = att$model, ..., ncores = 1) :
     Parameter estimates appear at bounds:
     lambda
    Warning in fitContinuous(phy = att$cache$phy, model = att$model, ..., ncores = 1) :
     Parameter estimates appear at bounds:
     lambda
    Warning in fitContinuous(phy = att$cache$phy, model = att$model, ..., ncores = 1) :
     Parameter estimates appear at bounds:
     lambda
    Warning in fitContinuous(phy = att$cache$phy, model = att$model, ..., ncores = 1) :
     Parameter estimates appear at bounds:
     lambda
    
    Execution halted
Flavor: r-release-osx-x86_64

Version: 1.0.3
Check: PDF version of manual
Result: FAIL
Flavor: r-release-osx-x86_64

Package rdflib

Current CRAN status: WARN: 3, OK: 10

Version: 0.2.3
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
     ...
    --- re-building ‘rdf_intro.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    
    Attaching package: 'dplyr'
    
    The following objects are masked from 'package:stats':
    
     filter, lag
    
    The following objects are masked from 'package:base':
    
     intersect, setdiff, setequal, union
    
    Quitting from lines 41-42 (rdf_intro.Rmd)
    Error: processing vignette 'rdf_intro.Rmd' failed with diagnostics:
    there is no package called 'webshot'
    --- failed re-building ‘rdf_intro.Rmd’
    
    SUMMARY: processing the following file failed:
     ‘rdf_intro.Rmd’
    
    Error: Vignette re-building failed.
    Execution halted
Flavor: r-patched-solaris-x86

Version: 0.2.3
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
     ...
    --- re-building ‘rdf_intro.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    
    Attaching package: 'dplyr'
    
    The following objects are masked from 'package:stats':
    
     filter, lag
    
    The following objects are masked from 'package:base':
    
     intersect, setdiff, setequal, union
    
    Quitting from lines 41-42 (rdf_intro.Rmd)
    Error: processing vignette 'rdf_intro.Rmd' failed with diagnostics:
    cannot open the connection
    --- failed re-building ‘rdf_intro.Rmd’
    
    SUMMARY: processing the following file failed:
     ‘rdf_intro.Rmd’
    
    Error: Vignette re-building failed.
    Execution halted
Flavor: r-release-osx-x86_64

Version: 0.2.3
Check: re-building of vignette outputs
Result: WARN
    Error in re-building vignettes:
     ...
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    
    Attaching package: 'dplyr'
    
    The following objects are masked from 'package:stats':
    
     filter, lag
    
    The following objects are masked from 'package:base':
    
     intersect, setdiff, setequal, union
    
    Quitting from lines 41-42 (rdf_intro.Rmd)
    Error: processing vignette 'rdf_intro.Rmd' failed with diagnostics:
    cannot open the connection
    Execution halted
Flavor: r-oldrel-osx-x86_64

Package rfigshare

Current CRAN status: NOTE: 13

Version: 0.3.7
Check: R code for possible problems
Result: NOTE
    fs_author_ids : <anonymous>: no visible global function definition for
     'select.list'
    fs_download : <anonymous>: no visible global function definition for
     'download.file'
    Undefined global functions or variables:
     download.file select.list
    Consider adding
     importFrom("utils", "download.file", "select.list")
    to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-devel-windows-ix86+x86_64-gcc8, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64

Package rfishbase

Current CRAN status: NOTE: 5, OK: 8

Version: 3.0.4
Check: data for non-ASCII characters
Result: NOTE
     Note: found 44 marked UTF-8 strings
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-solaris-x86, r-release-osx-x86_64, r-oldrel-osx-x86_64

Package RNeXML

Current CRAN status: NOTE: 13

Version: 2.4.0
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: 'taxadb'
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-devel-windows-ix86+x86_64-gcc8, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64

Version: 2.4.0
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: ‘taxadb’
    
    Suggests orphaned package: ‘geiger’
Flavor: r-devel-linux-x86_64-fedora-clang

Package treebase

Current CRAN status: OK: 13

Package virtuoso

Current CRAN status: ERROR: 3, OK: 10

Version: 0.1.4
Check: examples
Result: ERROR
    Running examples in ‘virtuoso-Ex.R’ failed
    The error most likely occurred in:
    
    > ### Name: vos_connect
    > ### Title: Connect to a Virtuoso Server over ODBC
    > ### Aliases: vos_connect
    >
    > ### ** Examples
    >
    > vos_status()
    Error in ps_pids() : Not implemented for this platform
    Calls: vos_status ... vos_process -> virtuoso_pid -> <Anonymous> -> ps_pids
    Execution halted
Flavor: r-patched-solaris-x86

Version: 0.1.4
Check: tests
Result: ERROR
     Running ‘spelling.R’ [0s/0s]
     Running ‘testthat.R’ [3s/3s]
    Running the tests in ‘tests/testthat.R’ failed.
    Last 13 lines of output:
     cannot open the connection
     Backtrace:
     1. virtuoso:::vos_odbcinst()
     2. base::write(...)
     3. base::cat(...)
     4. base::file(file, ifelse(append, "a", "w"))
    
     virtuoso isn't running.
     No active virtuoso process detected.
     ══ testthat results ═══════════════════════════════════════════════════════════
     [ OK: 14 | SKIPPED: 9 | WARNINGS: 1 | FAILED: 1 ]
     1. Error: We can generate an odbcinst file (@test-vos_odbc.R#23)
    
     Error: testthat unit tests failed
     Execution halted
Flavors: r-release-osx-x86_64, r-oldrel-osx-x86_64