Last updated on 2020-01-20 01:50:23 CET.
Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
---|---|---|---|---|---|---|
r-devel-linux-x86_64-debian-clang | 1.1.2 | 2.59 | 166.20 | 168.79 | OK | |
r-devel-linux-x86_64-debian-gcc | 1.1.2 | 2.31 | 129.65 | 131.96 | OK | |
r-devel-linux-x86_64-fedora-clang | 1.1.2 | 208.82 | OK | |||
r-devel-linux-x86_64-fedora-gcc | 1.1.2 | 202.17 | OK | |||
r-devel-windows-ix86+x86_64 | 1.1.2 | 9.00 | 174.00 | 183.00 | OK | |
r-devel-windows-ix86+x86_64-gcc8 | 1.1.2 | 6.00 | 227.00 | 233.00 | OK | |
r-patched-linux-x86_64 | 1.1.2 | 2.16 | 161.88 | 164.04 | OK | |
r-patched-solaris-x86 | 1.1.2 | 617.60 | OK | |||
r-release-linux-x86_64 | 1.1.2 | 2.25 | 159.42 | 161.67 | OK | |
r-release-windows-ix86+x86_64 | 1.1.2 | 10.00 | 215.00 | 225.00 | OK | |
r-release-osx-x86_64 | 1.1.2 | ERROR | ||||
r-oldrel-windows-ix86+x86_64 | 1.1.2 | 2.00 | 140.00 | 142.00 | ERROR | |
r-oldrel-osx-x86_64 | 1.1.2 | ERROR |
Version: 1.1.2
Check: tests
Result: ERROR
Running ‘testthat.R’ [92s/92s]
Running the tests in ‘tests/testthat.R’ failed.
Last 13 lines of output:
Del[1,3] 1.6452 0.437 0.762 1.368 1.6466 1.9426 2.487 1.00 600
Del[2,3] 0.9082 0.810 -0.650 0.361 0.9218 1.4739 2.420 1.02 76
Del[3,3] 0.0454 0.373 -0.702 -0.189 0.0398 0.2900 0.783 1.00 640
Del[4,3] -0.6387 0.595 -1.790 -1.038 -0.6515 -0.2574 0.551 1.01 200
Del[5,3] -0.9018 0.404 -1.704 -1.163 -0.9020 -0.6206 -0.137 1.01 1200
Del[6,3] -1.0743 0.678 -2.371 -1.544 -1.0778 -0.6191 0.187 1.00 410
Del[7,3] 0.8921 0.399 0.115 0.624 0.8844 1.1684 1.669 1.02 66
Del[8,3] 0.7501 0.568 -0.393 0.380 0.7388 1.1214 1.874 1.01 110
deviance 546.3476 40.052 490.302 525.784 543.9091 561.9607 612.321 1.01 160
══ testthat results ═══════════════════════════════════════════════════════════
[ OK: 3 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 1 ]
1. Failure: running test for hbbrFit (@test-hbbrFit.R#7)
Error: testthat unit tests failed
Execution halted
Flavor: r-release-osx-x86_64
Version: 1.1.2
Check: tests
Result: ERROR
Running 'testthat.R' [103s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> require(testthat)
Loading required package: testthat
> test_check("hbbr")
Loading required package: hbbr
Loading required package: R2jags
Loading required package: rjags
Loading required package: coda
Linked to JAGS 4.2.0
Loaded modules: basemod,bugs
Attaching package: 'R2jags'
The following object is masked from 'package:coda':
traceplot
Package hbbr is loaded that implements ...
hierarchical Bayesian benefit-risk assessment using DCE
Hello from hbbrFit!
Compiling model graph
Resolving undeclared variables
Allocating nodes
Graph information:
Observed stochastic nodes: 414
Unobserved stochastic nodes: 25
Total graph size: 7432
Initializing model
Total Time Elapsed: 46 Seconds
|**************************************************|
summary of hbbr output
|**************************************************|
mean sd 2.5% 25% 50% 75% 97.5% Rhat n.eff
bbar[1] 1.2446 1.028 -0.603 0.532 1.1801 1.9643 3.3610 1.14 21
bbar[2] 3.3954 1.470 0.670 2.350 3.4862 4.4501 6.1244 1.03 250
bbar[3] 7.3027 2.456 2.093 5.872 7.9623 9.1085 10.7877 1.01 510
bbar[4] 2.2793 0.930 0.522 1.623 2.2730 2.9046 4.1953 1.00 1900
bbar[5] 3.7077 1.154 1.208 2.927 3.8650 4.5796 5.6083 1.01 750
bbar[6] 4.4160 1.693 0.958 3.305 4.5914 5.5306 7.6043 1.02 450
bbar[7] 1.4463 0.915 -0.205 0.801 1.3991 2.0789 3.2960 1.01 190
bbar[8] 1.1539 1.134 -0.855 0.222 1.2530 1.9806 3.1558 1.01 150
bbar[9] 1.4368 1.325 -1.095 0.334 1.6489 2.4494 3.6141 1.04 50
bbar[10] -0.5412 0.799 -2.048 -1.089 -0.5762 0.0194 0.9890 1.05 50
bbar[11] -2.7694 1.338 -5.124 -3.718 -2.9603 -1.8181 -0.0911 1.04 58
bbar[12] -0.0815 0.704 -1.512 -0.566 -0.0948 0.4667 1.1737 1.13 18
bbar[13] -1.8009 1.216 -4.025 -2.667 -1.9796 -0.8065 0.4623 1.08 36
deviance 265.9556 25.410 221.331 248.087 263.6461 282.3294 320.2566 1.00 1100
-- 1. Failure: running test for hbbrFit (@test-hbbrFit.R#7) -------------------
abs(round(hbfit$bbar.means[1], 1) - 1.8) is not strictly less than 0.2. Difference: 0.4
Hello from hbbrAugFit!
Compiling model graph
Resolving undeclared variables
Allocating nodes
Graph information:
Observed stochastic nodes: 1200
Unobserved stochastic nodes: 104
Total graph size: 15249
Initializing model
Total Time Elapsed: 0.9 Minutes
|**************************************************|
| summary of augmented hbbr output |
|**************************************************|
mean sd 2.5% 25% 50% 75% 97.5% Rhat n.eff
Del[1,1] 4.6364 0.606 3.638 4.281 4.6403 4.9975 5.829 1.01 140
Del[2,1] 14.9821 1.419 12.870 14.359 14.9895 15.6471 17.659 1.01 150
Del[3,1] 2.7593 0.432 1.962 2.492 2.7492 3.0330 3.563 1.01 240
Del[4,1] 7.3376 0.794 5.854 6.892 7.3503 7.8045 8.763 1.02 74
Del[5,1] -1.3813 0.398 -2.172 -1.648 -1.3885 -1.1212 -0.572 1.00 1200
Del[6,1] -10.0711 0.976 -11.779 -10.585 -10.0974 -9.6204 -8.457 1.02 98
Del[7,1] -4.8941 0.548 -5.904 -5.201 -4.8683 -4.6105 -3.982 1.03 52
Del[8,1] -7.4261 0.792 -8.793 -7.855 -7.4178 -7.0269 -6.101 1.03 53
Del[1,2] 1.3128 0.475 0.423 0.988 1.3062 1.6398 2.242 1.01 280
Del[2,2] 3.0192 0.890 1.204 2.424 3.0445 3.6365 4.716 1.01 120
Del[3,2] 0.1173 0.370 -0.630 -0.131 0.1117 0.3667 0.847 1.01 140
Del[4,2] 0.8624 0.583 -0.243 0.427 0.8763 1.2757 1.996 1.00 450
Del[5,2] -0.2774 0.414 -1.085 -0.548 -0.2783 -0.0011 0.518 1.01 530
Del[6,2] -1.4146 0.680 -2.747 -1.866 -1.4427 -0.9549 -0.107 1.02 97
Del[7,2] -1.0458 0.427 -1.872 -1.349 -1.0564 -0.7444 -0.208 1.00 1200
Del[8,2] -1.9414 0.603 -3.120 -2.350 -1.9364 -1.5208 -0.800 1.00 1200
Del[1,3] 1.6452 0.437 0.762 1.368 1.6466 1.9426 2.487 1.00 600
Del[2,3] 0.9082 0.810 -0.650 0.361 0.9218 1.4739 2.420 1.02 76
Del[3,3] 0.0454 0.373 -0.702 -0.189 0.0398 0.2900 0.783 1.00 640
Del[4,3] -0.6387 0.595 -1.790 -1.038 -0.6515 -0.2574 0.551 1.01 200
Del[5,3] -0.9018 0.404 -1.704 -1.163 -0.9020 -0.6206 -0.137 1.01 1200
Del[6,3] -1.0743 0.678 -2.371 -1.544 -1.0778 -0.6191 0.187 1.00 410
Del[7,3] 0.8921 0.399 0.115 0.624 0.8844 1.1684 1.669 1.02 66
Del[8,3] 0.7501 0.568 -0.393 0.380 0.7388 1.1214 1.874 1.01 110
deviance 546.3476 40.052 490.302 525.784 543.9091 561.9607 612.321 1.01 160
== testthat results ===========================================================
[ OK: 3 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 1 ]
1. Failure: running test for hbbrFit (@test-hbbrFit.R#7)
Error: testthat unit tests failed
Execution halted
Flavor: r-oldrel-windows-ix86+x86_64
Version: 1.1.2
Check: tests
Result: ERROR
Running ‘testthat.R’ [89s/89s]
Running the tests in ‘tests/testthat.R’ failed.
Last 13 lines of output:
Del[1,3] 1.6452 0.437 0.762 1.368 1.6466 1.9426 2.487 1.00 600
Del[2,3] 0.9082 0.810 -0.650 0.361 0.9218 1.4739 2.420 1.02 76
Del[3,3] 0.0454 0.373 -0.702 -0.189 0.0398 0.2900 0.783 1.00 640
Del[4,3] -0.6387 0.595 -1.790 -1.038 -0.6515 -0.2574 0.551 1.01 200
Del[5,3] -0.9018 0.404 -1.704 -1.163 -0.9020 -0.6206 -0.137 1.01 1200
Del[6,3] -1.0743 0.678 -2.371 -1.544 -1.0778 -0.6191 0.187 1.00 410
Del[7,3] 0.8921 0.399 0.115 0.624 0.8844 1.1684 1.669 1.02 66
Del[8,3] 0.7501 0.568 -0.393 0.380 0.7388 1.1214 1.874 1.01 110
deviance 546.3476 40.052 490.302 525.784 543.9091 561.9607 612.321 1.01 160
══ testthat results ═══════════════════════════════════════════════════════════
[ OK: 3 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 1 ]
1. Failure: running test for hbbrFit (@test-hbbrFit.R#7)
Error: testthat unit tests failed
Execution halted
Flavor: r-oldrel-osx-x86_64