CRAN Package Check Results for Maintainer ‘Jason Vander Heiden <jason.vanderheiden at yale.edu>’

Last updated on 2020-01-20 01:50:54 CET.

Package WARN OK
airr 13
alakazam 13
shazam 1 12
tigger 3 10

Package airr

Current CRAN status: OK: 13

Package alakazam

Current CRAN status: OK: 13

Package shazam

Current CRAN status: WARN: 1, OK: 12

Version: 0.2.2
Check: package dependencies
Result: WARN
    Requires orphaned package: ‘SDMTools’
Flavor: r-devel-linux-x86_64-fedora-clang

Package tigger

Current CRAN status: WARN: 3, OK: 10

Version: 0.4.0
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
     ...
    --- re-building ‘Tigger-Vignette.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     The vignette engine knitr::rmarkdown is not available, because the rmarkdown package is not installed. Please install it.
    Loading required package: ggplot2
    
    Attaching package: 'dplyr'
    
    The following objects are masked from 'package:stats':
    
     filter, lag
    
    The following objects are masked from 'package:base':
    
     intersect, setdiff, setequal, union
    
    sh: nproc: not found
    Quitting from lines 107-109 (Tigger-Vignette.Rmd)
    Error: processing vignette 'Tigger-Vignette.Rmd' failed with diagnostics:
    error in running command: 'Illegal seek'
    --- failed re-building ‘Tigger-Vignette.Rmd’
    
    SUMMARY: processing the following file failed:
     ‘Tigger-Vignette.Rmd’
    
    Error: Vignette re-building failed.
    Execution halted
Flavor: r-patched-solaris-x86

Version: 0.4.0
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
    --- re-building ‘Tigger-Vignette.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    Loading required package: ggplot2
    
    Attaching package: 'dplyr'
    
    The following objects are masked from 'package:stats':
    
     filter, lag
    
    The following objects are masked from 'package:base':
    
     intersect, setdiff, setequal, union
    
    sh: sysctl: command not found
    Quitting from lines 107-109 (Tigger-Vignette.Rmd)
    Error: processing vignette 'Tigger-Vignette.Rmd' failed with diagnostics:
    error in running command
    --- failed re-building ‘Tigger-Vignette.Rmd’
    
    SUMMARY: processing the following file failed:
     ‘Tigger-Vignette.Rmd’
    
    Error: Vignette re-building failed.
    Execution halted
Flavor: r-release-osx-x86_64

Version: 0.4.0
Check: re-building of vignette outputs
Result: WARN
    Error in re-building vignettes:
     ...
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    Loading required package: ggplot2
    
    Attaching package: 'dplyr'
    
    The following objects are masked from 'package:stats':
    
     filter, lag
    
    The following objects are masked from 'package:base':
    
     intersect, setdiff, setequal, union
    
    sh: sysctl: command not found
    Quitting from lines 107-109 (Tigger-Vignette.Rmd)
    Error: processing vignette 'Tigger-Vignette.Rmd' failed with diagnostics:
    error in running command
    Execution halted
Flavor: r-oldrel-osx-x86_64