CRAN Package Check Results for Package memnet

Last updated on 2020-01-20 01:50:26 CET.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.1.0 58.54 34.14 92.68 ERROR
r-devel-linux-x86_64-debian-gcc 0.1.0 42.22 32.43 74.65 NOTE
r-devel-linux-x86_64-fedora-clang 0.1.0 142.19 NOTE
r-devel-linux-x86_64-fedora-gcc 0.1.0 137.42 OK
r-devel-windows-ix86+x86_64 0.1.0 165.00 105.00 270.00 NOTE
r-devel-windows-ix86+x86_64-gcc8 0.1.0 115.00 116.00 231.00 NOTE
r-patched-linux-x86_64 0.1.0 50.73 38.78 89.51 OK
r-patched-solaris-x86 0.1.0 138.30 OK
r-release-linux-x86_64 0.1.0 50.34 38.67 89.01 OK
r-release-windows-ix86+x86_64 0.1.0 158.00 99.00 257.00 OK
r-release-osx-x86_64 0.1.0 NOTE
r-oldrel-windows-ix86+x86_64 0.1.0 91.00 66.00 157.00 OK
r-oldrel-osx-x86_64 0.1.0 OK

Check Details

Version: 0.1.0
Check: examples
Result: ERROR
    Running examples in 'memnet-Ex.R' failed
    The error most likely occurred in:
    
    > base::assign(".ptime", proc.time(), pos = "CheckExEnv")
    > ### Name: alc
    > ### Title: Average local clustering (alc) coefficient
    > ### Aliases: alc
    >
    > ### ** Examples
    >
    >
    > # get fluency data
    > data(animal_fluency)
    >
    > # edge lists of fluency graphs
    > edge_list = threshold_graph(animal_fluency)
    >
    > # get adjacency matrices
    > adj = edg_to_adj(edge_list)
    >
    > # get local average clustering coefficient
    > alc(adj)
     ----------- FAILURE REPORT --------------
     --- failure: the condition has length > 1 ---
     --- srcref ---
    :
     --- package (from environment) ---
    memnet
     --- call from context ---
    alc(adj)
     --- call from argument ---
    if (class(adj) != "igraph") {
     g = igraph::graph_from_adjacency_matrix(adj, mode = mode)
     if (!is.null(weights))
     igraph::E(g)$weight = weights
    } else {
     g = adj
    }
     --- R stacktrace ---
    where 1: alc(adj)
    
     --- value of length: 2 type: logical ---
    [1] TRUE TRUE
     --- function from context ---
    function (adj, types = "uncorrected", weights = NULL, mode = "undirected")
    {
     if (class(adj) != "igraph") {
     g = igraph::graph_from_adjacency_matrix(adj, mode = mode)
     if (!is.null(weights))
     igraph::E(g)$weight = weights
     }
     else {
     g = adj
     }
     res = c()
     cc = igraph::transitivity(g, type = "localaverage")
     for (type in types) {
     if (type == "uncorrected") {
     res = c(res, cc)
     names(res)[length(res)] = "cc"
     }
     else if (type == "corrected") {
     nv = igraph::vcount(g)
     ne = igraph::ecount(g)
     k = ne/nv
     res = c(res, cc/(k/nv))
     names(res)[length(res)] = "cc_c"
     }
     }
     res
    }
    <bytecode: 0x27f9938>
    <environment: namespace:memnet>
     --- function search by body ---
    Function alc in namespace memnet has this body.
     ----------- END OF FAILURE REPORT --------------
    Error in if (class(adj) != "igraph") { : the condition has length > 1
    Calls: alc
    Execution halted
Flavor: r-devel-linux-x86_64-debian-clang

Version: 0.1.0
Check: package vignettes
Result: NOTE
    Package vignette with placeholder title 'Vignette Title':
     'memnet.Rmd'
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-ix86+x86_64, r-devel-windows-ix86+x86_64-gcc8

Version: 0.1.0
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
     ...
    --- re-building 'memnet.Rmd' using rmarkdown
     ----------- FAILURE REPORT --------------
     --- failure: the condition has length > 1 ---
     --- srcref ---
    :
     --- package (from environment) ---
    memnet
     --- call from context ---
    network_stats(edg_to_adj(net_comunity))
     --- call from argument ---
    if (class(adj) != "igraph") {
     g = igraph::graph_from_adjacency_matrix(adj, mode = mode)
     if (!is.null(weights))
     igraph::E(g)$weight = weights
    } else {
     g = adj
    }
     --- R stacktrace ---
    where 1: network_stats(edg_to_adj(net_comunity))
    where 2: eval(expr, envir, enclos)
    where 3: eval(expr, envir, enclos)
    where 4: withVisible(eval(expr, envir, enclos))
    where 5: withCallingHandlers(withVisible(eval(expr, envir, enclos)), warning = wHandler,
     error = eHandler, message = mHandler)
    where 6: handle(ev <- withCallingHandlers(withVisible(eval(expr, envir,
     enclos)), warning = wHandler, error = eHandler, message = mHandler))
    where 7: timing_fn(handle(ev <- withCallingHandlers(withVisible(eval(expr,
     envir, enclos)), warning = wHandler, error = eHandler, message = mHandler)))
    where 8: evaluate_call(expr, parsed$src[[i]], envir = envir, enclos = enclos,
     debug = debug, last = i == length(out), use_try = stop_on_error !=
     2L, keep_warning = keep_warning, keep_message = keep_message,
     output_handler = output_handler, include_timing = include_timing)
    where 9: evaluate::evaluate(...)
    where 10: evaluate(code, envir = env, new_device = FALSE, keep_warning = !isFALSE(options$warning),
     keep_message = !isFALSE(options$message), stop_on_error = if (options$error &&
     options$include) 0L else 2L, output_handler = knit_handlers(options$render,
     options))
    where 11: in_dir(input_dir(), evaluate(code, envir = env, new_device = FALSE,
     keep_warning = !isFALSE(options$warning), keep_message = !isFALSE(options$message),
     stop_on_error = if (options$error && options$include) 0L else 2L,
     output_handler = knit_handlers(options$render, options)))
    where 12: block_exec(params)
    where 13: call_block(x)
    where 14: process_group.block(group)
    where 15: process_group(group)
    where 16: withCallingHandlers(if (tangle) process_tangle(group) else process_group(group),
     error = function(e) {
     setwd(wd)
     cat(res, sep = "\n", file = output %n% "")
     message("Quitting from lines ", paste(current_lines(i),
     collapse = "-"), " (", knit_concord$get("infile"),
     ") ")
     })
    where 17: process_file(text, output)
    where 18: knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet)
    where 19: rmarkdown::render(file, encoding = encoding, quiet = quiet, envir = globalenv(),
     ...)
    where 20: vweave_rmarkdown(...)
    where 21: engine$weave(file, quiet = quiet, encoding = enc)
    where 22: doTryCatch(return(expr), name, parentenv, handler)
    where 23: tryCatchOne(expr, names, parentenv, handlers[[1L]])
    where 24: tryCatchList(expr, classes, parentenv, handlers)
    where 25: tryCatch({
     engine$weave(file, quiet = quiet, encoding = enc)
     setwd(startdir)
     output <- find_vignette_product(name, by = "weave", engine = engine)
     if (!have.makefile && vignette_is_tex(output)) {
     texi2pdf(file = output, clean = FALSE, quiet = quiet)
     output <- find_vignette_product(name, by = "texi2pdf",
     engine = engine)
     }
     outputs <- c(outputs, output)
    }, error = function(e) {
     thisOK <<- FALSE
     fails <<- c(fails, file)
     message(gettextf("Error: processing vignette '%s' failed with diagnostics:\n%s",
     file, conditionMessage(e)))
    })
    where 26: tools:::buildVignettes(dir = "/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/memnet.Rcheck/vign_test/memnet",
     ser_elibs = "/tmp/RtmpWze9yu/file5449a357492.rds")
    
     --- value of length: 2 type: logical ---
    [1] TRUE TRUE
     --- function from context ---
    function (adj, giant = FALSE, weights = NULL, mode = "undirected")
    {
     if (class(adj) != "igraph") {
     g = igraph::graph_from_adjacency_matrix(adj, mode = mode)
     if (!is.null(weights))
     igraph::E(g)$weight = weights
     }
     else {
     g = adj
     }
     comp = l_comp(g, igraph = TRUE)
     comp_p = comp[[2]]
     if (giant == TRUE) {
     g = comp[[1]]
     }
     n_v = igraph::vcount(g)
     n_e = igraph::ecount(g)
     k = n_e/n_v
     cc = igraph::transitivity(g, type = "localaverage")
     cc_c = cc/(k/n_v)
     aspl = igraph::mean_distance(g, directed = mode == "directed")
     aspl_c = aspl/(log(n_v)/log(n_e))
     smallw = cc_c/aspl_c
     assor = igraph::assortativity_degree(g, directed = mode ==
     "directed")
     res = c(n_v, n_e, k, cc, cc_c, aspl, aspl_c, smallw, assor,
     comp_p)
     names(res) = c("|V|", "|E|", "k", "C", "Cc", "L", "Lc", "S",
     "A", "p")
     res
    }
    <bytecode: 0x2edba00>
    <environment: namespace:memnet>
     --- function search by body ---
    Function network_stats in namespace memnet has this body.
     ----------- END OF FAILURE REPORT --------------
    Quitting from lines 33-59 (memnet.Rmd)
    Error: processing vignette 'memnet.Rmd' failed with diagnostics:
    the condition has length > 1
    --- failed re-building 'memnet.Rmd'
    
    SUMMARY: processing the following file failed:
     'memnet.Rmd'
    
    Error: Vignette re-building failed.
    Execution halted
Flavor: r-devel-linux-x86_64-debian-clang

Version: 0.1.0
Check: installed package size
Result: NOTE
     installed size is 5.7Mb
     sub-directories of 1Mb or more:
     doc 1.6Mb
     libs 3.8Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-release-osx-x86_64