PAFway: Pairwise Association of Functional Annotations

Finds pairs of functional annotations or gene ontology (GO) terms that are enriched within a directed network (such as a gene regulatory network). This works with or without edge weights and includes visualizations (both as a network where the functions are nodes and as a heatmap). PAFway is an acronym for Pairwise Associations of Functional annotations in biological networks and pathWAYs.

Version: 0.1.2
Imports: igraph, gplots, ggplot2, GGally, network, sna, scales, stats, grDevices
Suggests: knitr, rmarkdown
Published: 2019-12-16
Author: Daphne Ezer [aut, cre], Mahair Mahjoub [aut]
Maintainer: Daphne Ezer <daphne.ezer at>
License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
NeedsCompilation: no
Materials: NEWS
CRAN checks: PAFway results


Reference manual: PAFway.pdf
Vignettes: PAFway
Package source: PAFway_0.1.2.tar.gz
Windows binaries: r-devel:, r-devel-gcc8:, r-release:, r-oldrel:
OS X binaries: r-release: PAFway_0.1.2.tgz, r-oldrel: PAFway_0.1.2.tgz


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