Finds pairs of functional annotations or gene ontology (GO) terms that are enriched within a directed network (such as a gene regulatory network). This works with or without edge weights and includes visualizations (both as a network where the functions are nodes and as a heatmap). PAFway is an acronym for Pairwise Associations of Functional annotations in biological networks and pathWAYs.
| Version: | 0.1.2 |
| Imports: | igraph, gplots, ggplot2, GGally, network, sna, scales, stats, grDevices |
| Suggests: | knitr, rmarkdown |
| Published: | 2019-12-16 |
| Author: | Daphne Ezer [aut, cre], Mahair Mahjoub [aut] |
| Maintainer: | Daphne Ezer <daphne.ezer at york.ac.uk> |
| License: | GPL-2 | GPL-3 [expanded from: GPL (≥ 2)] |
| NeedsCompilation: | no |
| Materials: | NEWS |
| CRAN checks: | PAFway results |
| Reference manual: | PAFway.pdf |
| Vignettes: |
PAFway |
| Package source: | PAFway_0.1.2.tar.gz |
| Windows binaries: | r-devel: PAFway_0.1.2.zip, r-devel-gcc8: PAFway_0.1.2.zip, r-release: PAFway_0.1.2.zip, r-oldrel: PAFway_0.1.2.zip |
| OS X binaries: | r-release: PAFway_0.1.2.tgz, r-oldrel: PAFway_0.1.2.tgz |
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