dynwrap: Representing and Inferring Single-Cell Trajectories

Provides functionality to infer trajectories from single-cell data, represent them into a common format, and adapt them. Other biological information can also be added, such as cellular grouping, RNA velocity and annotation. Saelens et al. (2019) <doi:10.1038/s41587-019-0071-9>.

Version: 1.1.4
Depends: R (≥ 3.0.0)
Imports: assertthat, babelwhale, dplyr, dynutils (≥ 1.0.3), dynparam, FNN, hdf5r, igraph, glue, jsonlite, magrittr, Matrix, methods, purrr, processx, readr, stringr, reshape2, testthat, tibble, tidyr, yaml, crayon
Suggests: curl, devtools, dyndimred, ggplot2, knitr, lhs, pkgload, ranger, rmarkdown, viridis
Published: 2019-10-11
Author: Robrecht Cannoodt ORCID iD [aut, cre] (rcannood), Wouter Saelens ORCID iD [aut] (zouter)
Maintainer: Robrecht Cannoodt <rcannood at gmail.com>
BugReports: https://github.com/dynverse/dynwrap/issues
License: GPL-3
URL: https://github.com/dynverse/dynwrap
NeedsCompilation: no
Citation: dynwrap citation info
Materials: README NEWS
CRAN checks: dynwrap results


Reference manual: dynwrap.pdf
Vignettes: Creating a TI method: Container
Creating a TI method: Script
Creating a TI method: R
Creating a TI method: Wrapping trajectories
Package source: dynwrap_1.1.4.tar.gz
Windows binaries: r-devel: dynwrap_1.1.4.zip, r-devel-gcc8: dynwrap_1.1.4.zip, r-release: dynwrap_1.1.4.zip, r-oldrel: dynwrap_1.1.4.zip
OS X binaries: r-release: not available, r-oldrel: dynwrap_1.1.4.tgz

Reverse dependencies:

Reverse imports: SCORPIUS


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