Provides functionality to infer trajectories from single-cell data, represent them into a common format, and adapt them. Other biological information can also be added, such as cellular grouping, RNA velocity and annotation. Saelens et al. (2019) <doi:10.1038/s41587-019-0071-9>.
Version: | 1.1.4 |
Depends: | R (≥ 3.0.0) |
Imports: | assertthat, babelwhale, dplyr, dynutils (≥ 1.0.3), dynparam, FNN, hdf5r, igraph, glue, jsonlite, magrittr, Matrix, methods, purrr, processx, readr, stringr, reshape2, testthat, tibble, tidyr, yaml, crayon |
Suggests: | curl, devtools, dyndimred, ggplot2, knitr, lhs, pkgload, ranger, rmarkdown, viridis |
Published: | 2019-10-11 |
Author: | Robrecht Cannoodt |
Maintainer: | Robrecht Cannoodt <rcannood at gmail.com> |
BugReports: | https://github.com/dynverse/dynwrap/issues |
License: | GPL-3 |
URL: | https://github.com/dynverse/dynwrap |
NeedsCompilation: | no |
Citation: | dynwrap citation info |
Materials: | README NEWS |
CRAN checks: | dynwrap results |
Reference manual: | dynwrap.pdf |
Vignettes: |
Creating a TI method: Container Creating a TI method: Script Creating a TI method: R Creating a TI method: Wrapping trajectories |
Package source: | dynwrap_1.1.4.tar.gz |
Windows binaries: | r-devel: dynwrap_1.1.4.zip, r-devel-gcc8: dynwrap_1.1.4.zip, r-release: dynwrap_1.1.4.zip, r-oldrel: dynwrap_1.1.4.zip |
OS X binaries: | r-release: not available, r-oldrel: dynwrap_1.1.4.tgz |
Reverse imports: | SCORPIUS |
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