eggCounts: Hierarchical Modelling of Faecal Egg Counts

An implementation of Bayesian hierarchical models for faecal egg count data to assess anthelmintic efficacy. Bayesian inference is done via MCMC sampling using 'Stan' <>.

Version: 2.3
Depends: R (≥ 3.4.0), Rcpp (≥ 0.12.0)
Imports: methods, utils, rstan (≥ 2.18.1), boot, coda, numbers, lattice, rootSolve
LinkingTo: rstan (≥ 2.18.1), Rcpp (≥ 0.12.0), BH (≥ 1.66.0), StanHeaders (≥ 2.18.0), RcppEigen (≥
Suggests: eggCountsExtra, R.rsp, testthat
Published: 2020-01-19
Author: Craig Wang ORCID iD [aut, cre], Michaela Paul [aut], Tea Isler [ctb], Reinhard Furrer ORCID iD [ctb], Trustees of Columbia University [cph] (src/init.cpp, tools/make_cc.R, R/stanmodels.R)
Maintainer: Craig Wang < at>
License: GPL (≥ 3)
NeedsCompilation: yes
SystemRequirements: GNU make
Citation: eggCounts citation info
Materials: NEWS
CRAN checks: eggCounts results


Reference manual: eggCounts.pdf
Vignettes: eggCounts: a Bayesian hierarchical toolkit to model faecal egg count reductions
Package source: eggCounts_2.3.tar.gz
Windows binaries: r-devel:, r-devel-gcc8:, r-release:, r-oldrel:
OS X binaries: r-release: eggCounts_2.2-1.tgz, r-oldrel: eggCounts_2.2-1.tgz
Old sources: eggCounts archive


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