idiogramFISH: Idiograms with Marks and Karyotype Indices

Plot idiograms of several karyotypes having a set of data.frames for chromosome data and optionally mark data. Supports micrometers and Mb. Marks can have square or dot form, its legend (label) can be drawn inline or to the right of karyotypes. It is possible to calculate chromosome indices by Levan et al. (1964) <doi:10.1111/j.1601-5223.1964.tb01953.x>, karyotype indices of Watanabe et al. (1999) <doi:10.1007/PL00013869> and Romero-Zarco (1986) <doi:10.2307/1221906> and classify chromosomes by morphology Guerra (1986) and Levan et al. (1964).

Version: 1.12.1
Depends: R (≥ 3.0)
Imports: crayon, plyr, dplyr
Suggests: ggpubr, ggtree, phytools, ggplot2, treeio, knitr, kableExtra, prettydoc, rvcheck, badger, rmarkdown, RCurl
Published: 2020-01-10
Author: Fernando Roa [aut, cre], Mariana PC Telles [ctb]
Maintainer: Fernando Roa <froao at>
License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
NeedsCompilation: no
SystemRequirements: pandoc (>= 2.0)
Citation: idiogramFISH citation info
Materials: README NEWS
CRAN checks: idiogramFISH results


Reference manual: idiogramFISH.pdf
Vignettes: 1. Plotting monocentric chromosomes
2. Plotting holocentric chromosomes
3. Groups of chromosomes
4. Plotting alongside phylogeny
5. Human karyotype
idiogramFISH: Installation and minimal examples
Package source: idiogramFISH_1.12.1.tar.gz
Windows binaries: r-devel:, r-devel-gcc8:, r-release:, r-oldrel:
OS X binaries: r-release: idiogramFISH_1.12.1.tgz, r-oldrel: idiogramFISH_1.12.1.tgz
Old sources: idiogramFISH archive


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