Last updated on 2020-02-15 01:01:24 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.2.2 | 37.62 | 544.26 | 581.88 | NOTE | |
| r-devel-linux-x86_64-debian-gcc | 0.2.2 | 29.40 | 414.43 | 443.83 | NOTE | |
| r-devel-linux-x86_64-fedora-clang | 0.2.2 | 733.46 | NOTE | |||
| r-devel-linux-x86_64-fedora-gcc | 0.2.2 | 721.99 | NOTE | |||
| r-devel-windows-ix86+x86_64 | 0.2.2 | 82.00 | 394.00 | 476.00 | NOTE | --no-vignettes |
| r-devel-windows-ix86+x86_64-gcc8 | 0.2.2 | 103.00 | 374.00 | 477.00 | ERROR | --no-vignettes |
| r-patched-linux-x86_64 | 0.2.2 | 34.69 | 518.43 | 553.12 | NOTE | |
| r-patched-solaris-x86 | 0.2.2 | 1142.80 | NOTE | |||
| r-release-linux-x86_64 | 0.2.2 | 33.33 | 512.46 | 545.79 | NOTE | |
| r-release-windows-ix86+x86_64 | 0.2.2 | 63.00 | 380.00 | 443.00 | NOTE | --no-vignettes |
| r-release-osx-x86_64 | 0.2.2 | NOTE | ||||
| r-oldrel-windows-ix86+x86_64 | 0.2.2 | 51.00 | 545.00 | 596.00 | NOTE | --no-vignettes |
| r-oldrel-osx-x86_64 | 0.2.2 | NOTE |
Version: 0.2.2
Check: package dependencies
Result: NOTE
Packages suggested but not available for checking: 'dggrids', 'INLA'
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64
Version: 0.2.2
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: ‘dggrids’
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Version: 0.2.2
Check: installed package size
Result: NOTE
installed size is 8.2Mb
sub-directories of 1Mb or more:
data 4.8Mb
doc 2.1Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-patched-solaris-x86, r-release-osx-x86_64, r-oldrel-osx-x86_64
Version: 0.2.2
Flags: --no-vignettes
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: 'dggrids'
Flavors: r-devel-windows-ix86+x86_64, r-devel-windows-ix86+x86_64-gcc8, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64
Version: 0.2.2
Flags: --no-vignettes
Check: installed package size
Result: NOTE
installed size is 9.1Mb
sub-directories of 1Mb or more:
data 4.8Mb
doc 2.1Mb
libs 1.4Mb
Flavors: r-devel-windows-ix86+x86_64, r-devel-windows-ix86+x86_64-gcc8, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64
Version: 0.2.2
Flags: --no-vignettes
Check: running tests for arch ‘i386’
Result: ERROR
Running 'testthat.R' [64s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> ops <- options("crayon.enabled" = FALSE)
> library(testthat)
> require("covr")
Loading required package: covr
>
> test_check("FRK")
Loading required package: FRK
Binned data in 0.02 seconds
Binned data in 0 seconds
-- 1. Error: plane_BAUs (@test_BAUs.R#36) -------------------------------------
INLA installation error; no such file
Backtrace:
1. FRK::auto_BAUs(...)
3. FRK:::auto_BAU(...)
4. FRK:::.find_hull(coords, nonconvex_hull = nonconvex_hull, convex = convex)
5. INLA::inla.nonconvex.hull(coords, convex = convex)
6. INLA::inla.contour.segment(...)
7. INLA::inla.mesh.create(...)
10. INLA::inla.getOption("fmesher.arg")
11. INLA:::inla.call.builtin()
-- 2. Error: SpaceTime_BAUs (@test_BAUs.R#142) --------------------------------
INLA installation error; no such file
Backtrace:
1. FRK::auto_BAUs(...)
3. FRK:::auto_BAU(...)
5. FRK:::auto_BAU(...)
6. FRK:::.find_hull(coords, nonconvex_hull = nonconvex_hull, convex = convex)
7. INLA::inla.nonconvex.hull(coords, convex = convex)
8. INLA::inla.contour.segment(...)
9. INLA::inla.mesh.create(...)
12. INLA::inla.getOption("fmesher.arg")
13. INLA:::inla.call.builtin()
Normalising basis function evaluations at BAU level ...
Binning data ...
Binned data in 0.02 seconds
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Maximum EM iterations reached
Intercept
0.1860381
Formula: z ~ 1
Number of datasets: 1
Number of basis functions: 18
Class of basis functions: Basis
Number of BAUs [extract using object@BAUs]: 134
Number of observations [extract using object@Z]: 50
Mean obs. variance at BAU level [extract using object@Ve]: 0.01
Fine-scale variance proportionality constant [extract using object@sigma2fshat]: 0.1211177
Dimensions of C in Z = C*Y + e [extract using object@Cmat]: c(50L, 134L)
Dimensions of S in Y = X*alpha + S*eta + delta [extract using object@S]: c(50L, 18L)
Number of covariates: 1
Formula: z ~ 1
Number of datasets: 1
Number of basis functions: 18
Class of basis functions: Basis
Number of BAUs [extract using object@BAUs]: 134
Number of observations [extract using object@Z]: 50
Mean obs. variance at BAU level [extract using object@Ve]: 0.01
Fine-scale variance proportionality constant [extract using object@sigma2fshat]: 0.1211177
Dimensions of C in Z = C*Y + e [extract using object@Cmat]: c(50L, 134L)
Dimensions of S in Y = X*alpha + S*eta + delta [extract using object@S]: c(50L, 18L)
Number of covariates: 1
Normalising basis function evaluations at BAU level ...
Binning data ...
Binned data in 0 seconds
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Maximum EM iterations reached
Normalising basis function evaluations at BAU level ...
Binning data ...
Binned data in 0.03 seconds
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Maximum EM iterations reached
Normalising basis function evaluations at BAU level ...
Binning data ...
Binned data in 0.02 seconds
Binned data in 0.02 seconds
Binned data in 0.01 seconds
Binned data in 0.02 seconds
Binned data in 0.01 seconds
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Maximum EM iterations reached
[1] "Entering test_basis.R"
Number of basis functions: 50
Number of resolutions: 1
Type of manifold: surface of sphere
Dimension of manifold: 2
First basis function:
function (s) { stopifnot(ncol(s) == dimensions(manifold)) dist_sq <- distance(manifold, s, mu)^2 exp(-0.5 * dist_sq/(std^2)) }
Number of basis functions: 50
Number of resolutions: 1
Type of manifold: surface of sphere
Dimension of manifold: 2
First basis function:
function (s) { stopifnot(ncol(s) == dimensions(manifold)) dist_sq <- distance(manifold, s, mu)^2 exp(-0.5 * dist_sq/(std^2)) }
Averaging over polygons...
First set of basis functions
----------------------------
Number of basis functions: 10
Number of resolutions: 1
Type of manifold: surface of sphere
Dimension of manifold: 2
First basis function:
function (s) { stopifnot(ncol(s) == dimensions(manifold)) y <- distance(manifold, s, c) (1 - (y/R)^2)^2 * (y < R) }
Second set of basis functions
-----------------------------
Number of basis functions: 3
Number of resolutions: 1
Type of manifold: real_line
Dimension of manifold: 1
First basis function:
function (s) { stopifnot(ncol(s) == dimensions(manifold)) y <- distance(manifold, s, c) (1 - (y/R)^2)^2 * (y < R) }
Total number of basis functions: 30First set of basis functions
----------------------------
Number of basis functions: 10
Number of resolutions: 1
Type of manifold: surface of sphere
Dimension of manifold: 2
First basis function:
function (s) { stopifnot(ncol(s) == dimensions(manifold)) y <- distance(manifold, s, c) (1 - (y/R)^2)^2 * (y < R) }
Second set of basis functions
-----------------------------
Number of basis functions: 3
Number of resolutions: 1
Type of manifold: real_line
Dimension of manifold: 1
First basis function:
function (s) { stopifnot(ncol(s) == dimensions(manifold)) y <- distance(manifold, s, c) (1 - (y/R)^2)^2 * (y < R) }
Total number of basis functions: 30[1] "Entering test_domains.R"
Type of manifold: surface of sphere
Radius of sphere: 6371
Dimension of manifold: 2
Distance function:
function (x1, x2 = NULL) dist_sphere(x1, x2, R = R)
Type of manifold: surface of sphere
Radius of sphere: 6371
Dimension of manifold: 2
Distance function:
function (x1, x2 = NULL) dist_sphere(x1, x2, R = R)
Type of manifold: plane
Dimension of manifold: 2
Distance function:
function (x1, x2) distR(x1, x2)
Type of manifold: plane
Dimension of manifold: 2
Distance function:
function (x1, x2) distR(x1, x2)
Type of manifold: real_line
Dimension of manifold: 1
Distance function:
function (x1, x2) distR(x1, x2)
Type of manifold: real_line
Dimension of manifold: 1
Distance function:
function (x1, x2) distR(x1, x2)
Type of manifold: STplane
Dimension of manifold: 3
Distance function:
function (x1, x2) distR(x1, x2)
Type of manifold: STplane
Dimension of manifold: 3
Distance function:
function (x1, x2) distR(x1, x2)
Type of manifold: STplane
Dimension of manifold: 3
Distance function:
function (x1, x2) distR(x1, x2)
Type of manifold: STplane
Dimension of manifold: 3
Distance function:
function (x1, x2) distR(x1, x2)
... Fitting variogram for estimating measurement error
sigma2e estimate = 0.03310956
Averaging over polygons...
Normalising basis function evaluations at BAU level ...
Binning data ...
Binned data in 0.04 seconds
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|======================================================== | 80%Minimum tolerance reached
Constructing BAUs...
Generating basis functions...
...Automatically choosing number of functions...
Modelling using 819 basis functions
Constructing SRE model...
Normalising basis function evaluations at BAU level ...
... Fitting variogram for estimating measurement error
sigma2e estimate = 0.2238202
Binning data ...
Binned data in 0.14 seconds
Fitting SRE model...
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Maximum EM iterations reached
== testthat results ===========================================================
[ OK: 188 | SKIPPED: 0 | WARNINGS: 1 | FAILED: 2 ]
1. Error: plane_BAUs (@test_BAUs.R#36)
2. Error: SpaceTime_BAUs (@test_BAUs.R#142)
Error: testthat unit tests failed
Execution halted
Flavor: r-devel-windows-ix86+x86_64-gcc8
Version: 0.2.2
Check: package dependencies
Result: NOTE
Packages suggested but not available for checking: ‘dggrids’ ‘INLA’
Flavor: r-oldrel-osx-x86_64