CRAN Package Check Results for Maintainer ‘Thomas Lin Pedersen <thomasp85 at gmail.com>’

Last updated on 2020-02-15 01:02:13 CET.

Package ERROR WARN NOTE OK
ambient 13
curry 13
densityClust 13
farver 13
fiery 13
gganimate 1 12
ggforce 1 5 7
ggraph 8 5
hierarchicalSets 13
lime 1 2 10
particles 5 8
patchwork 1 12
reqres 13
routr 5 8
scico 13
shinyFiles 13
tidygraph 1 12
transformr 13
tweenr 13

Package ambient

Current CRAN status: OK: 13

Additional issues

clang-UBSAN gcc-UBSAN

Package curry

Current CRAN status: OK: 13

Package densityClust

Current CRAN status: OK: 13

Package farver

Current CRAN status: OK: 13

Package fiery

Current CRAN status: OK: 13

Package gganimate

Current CRAN status: WARN: 1, OK: 12

Version: 1.0.5
Check: package dependencies
Result: NOTE
    Packages suggested but not available for checking: 'av', 'gifski'
Flavor: r-patched-solaris-x86

Version: 1.0.5
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
     ...
    --- re-building ‘gganimate.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    
     *** caught segfault ***
    address 0, cause 'memory not mapped'
    
    Traceback:
     1: magick_image_write(image, format, quality, depth, density, comment)
     2: image_write(x, path = tmp, format = ext)
     3: in_dir(d, expr)
     4: in_base_dir({ dir.create(dirname(tmp), showWarnings = FALSE, recursive = TRUE) image_write(x, path = tmp, format = ext)})
     5: `knit_print.magick-image`(anim, options, ...)
     6: knitr::knit_print(anim, options, ...)
     7: knit_print.gganim(x, ...)
     8: knit_print(x, ...)
     9: withVisible(knit_print(x, ...))
    10: fun(x, options = options)
    11: value_fun(ev$value, ev$visible)
    12: withVisible(value_fun(ev$value, ev$visible))
    13: withCallingHandlers(withVisible(value_fun(ev$value, ev$visible)), warning = wHandler, error = eHandler, message = mHandler)
    14: handle(pv <- withCallingHandlers(withVisible(value_fun(ev$value, ev$visible)), warning = wHandler, error = eHandler, message = mHandler))
    15: evaluate_call(expr, parsed$src[[i]], envir = envir, enclos = enclos, debug = debug, last = i == length(out), use_try = stop_on_error != 2L, keep_warning = keep_warning, keep_message = keep_message, output_handler = output_handler, include_timing = include_timing)
    16: evaluate::evaluate(...)
    17: evaluate(code, envir = env, new_device = FALSE, keep_warning = !isFALSE(options$warning), keep_message = !isFALSE(options$message), stop_on_error = if (options$error && options$include) 0L else 2L, output_handler = knit_handlers(options$render, options))
    18: in_dir(input_dir(), evaluate(code, envir = env, new_device = FALSE, keep_warning = !isFALSE(options$warning), keep_message = !isFALSE(options$message), stop_on_error = if (options$error && options$include) 0L else 2L, output_handler = knit_handlers(options$render, options)))
    19: block_exec(params)
    20: call_block(x)
    21: process_group.block(group)
    22: process_group(group)
    23: withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { setwd(wd) cat(res, sep = "\n", file = output %n% "") message("Quitting from lines ", paste(current_lines(i), collapse = "-"), " (", knit_concord$get("infile"), ") ") })
    24: process_file(text, output)
    25: knit(input, text = text, envir = envir, quiet = quiet)
    26: knit2html(..., force_v1 = TRUE)
    27: (if (grepl("\\.[Rr]md$", file)) knit2html_v1 else if (grepl("\\.[Rr]rst$", file)) knit2pandoc else knit)(file, encoding = encoding, quiet = quiet, envir = globalenv(), ...)
    28: vweave(...)
    29: engine$weave(file, quiet = quiet, encoding = enc)
    30: doTryCatch(return(expr), name, parentenv, handler)
    31: tryCatchOne(expr, names, parentenv, handlers[[1L]])
    32: tryCatchList(expr, classes, parentenv, handlers)
    33: tryCatch({ engine$weave(file, quiet = quiet, encoding = enc) setwd(startdir) output <- find_vignette_product(name, by = "weave", engine = engine) if (!have.makefile && vignette_is_tex(output)) { texi2pdf(file = output, clean = FALSE, quiet = quiet) output <- find_vignette_product(name, by = "texi2pdf", engine = engine) } outputs <- c(outputs, output)}, error = function(e) { thisOK <<- FALSE fails <<- c(fails, file) message(gettextf("Error: processing vignette '%s' failed with diagnostics:\n%s", file, conditionMessage(e)))})
    34: tools:::buildVignettes(dir = "/home/ripley/R/packages/tests32/gganimate.Rcheck/vign_test/gganimate", ser_elibs = "/tmp/Rtmp0EaWf4/file702ee736b67.rds")
    An irrecoverable exception occurred. R is aborting now ...
Flavor: r-patched-solaris-x86

Package ggforce

Current CRAN status: WARN: 1, NOTE: 5, OK: 7

Version: 0.3.1
Check: installed package size
Result: NOTE
     installed size is 19.9Mb
     sub-directories of 1Mb or more:
     help 1.1Mb
     libs 18.0Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-release-osx-x86_64, r-oldrel-osx-x86_64

Version: 0.3.1
Check: dependencies in R code
Result: NOTE
    Namespace in Imports field not imported from: ‘withr’
     All declared Imports should be used.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-solaris-x86, r-release-osx-x86_64, r-oldrel-osx-x86_64

Version: 0.3.1
Check: whether package can be installed
Result: WARN
    Found the following significant warnings:
     Warning: S3 methods '[.fun_list', '[.grouped_df', 'all.equal.tbl_df', 'anti_join.data.frame', 'anti_join.tbl_df', 'arrange.data.frame', 'arrange.default', 'arrange.grouped_df', 'arrange.tbl_df', 'arrange_.data.frame', 'arrange_.tbl_df', 'as.data.frame.grouped_df', 'as.data.frame.rowwise_df', 'as.data.frame.tbl_cube', 'as.table.tbl_cube', 'as.tbl.data.frame', 'as.tbl.tbl', 'as.tbl_cube.array', 'as.tbl_cube.data.frame', 'as.tbl_cube.matrix', 'as.tbl_cube.table', 'as_tibble.grouped_df', 'as_tibble.tbl_cube', 'auto_copy.tbl_cube', 'auto_copy.tbl_df', 'cbind.grouped_df', 'collapse.data.frame', 'collect.data.frame', 'common_by.NULL', 'common_by.character', 'common_by.default', 'common_by.list', 'compute.data.frame', 'copy_to.DBIConnection', 'copy_to.src_local', 'default_missing.data.frame', 'default_missing.default', 'dim.tbl_cube', 'distinct.data.frame', 'distinct.default', 'distinct.grouped_df', 'distinct.tbl_df', 'distinct_.data.frame', 'distinct_.grouped_df', 'distinct_.tbl_df', 'do.NULL', 'do.da [... truncated]
Flavor: r-oldrel-windows-ix86+x86_64

Package ggraph

Current CRAN status: NOTE: 8, OK: 5

Version: 2.0.1
Check: installed package size
Result: NOTE
     installed size is 7.5Mb
     sub-directories of 1Mb or more:
     doc 3.6Mb
     libs 2.6Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-windows-ix86+x86_64, r-patched-solaris-x86, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64

Version: 2.0.0
Check: installed package size
Result: NOTE
     installed size is 7.1Mb
     sub-directories of 1Mb or more:
     doc 3.6Mb
     libs 2.3Mb
Flavor: r-devel-windows-ix86+x86_64-gcc8

Package hierarchicalSets

Current CRAN status: NOTE: 13

Version: 1.0.2
Check: dependencies in R code
Result: NOTE
    Unexported objects imported by ':::' calls:
     'ggplot2:::build_guides' 'ggplot2:::guide_axis'
     'ggplot2:::scales_list'
     See the note in ?`:::` about the use of this operator.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-devel-windows-ix86+x86_64-gcc8, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64

Version: 1.0.2
Check: compiled code
Result: NOTE
    File ‘hierarchicalSets/libs/hierarchicalSets.so’:
     Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’
    
    It is good practice to register native routines and to disable symbol
    search.
    
    See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Package lime

Current CRAN status: ERROR: 1, WARN: 2, OK: 10

Version: 0.5.1
Check: examples
Result: ERROR
    Running examples in ‘lime-Ex.R’ failed
    The error most likely occurred in:
    
    > ### Name: plot_superpixels
    > ### Title: Test super pixel segmentation
    > ### Aliases: plot_superpixels
    >
    > ### ** Examples
    >
    > image <- system.file('extdata', 'produce.png', package = 'lime')
    >
    > # plot with default settings
    > plot_superpixels(image)
    
     *** caught segfault ***
    address 2c, cause 'memory not mapped'
    
    Traceback:
     1: magick_image_convolve_kernel(image, kernel, iterations, scaling, bias)
     2: magick::image_convolve(contour, "Laplacian")
     3: plot_superpixels(image)
    An irrecoverable exception occurred. R is aborting now ...
Flavor: r-patched-solaris-x86

Version: 0.5.1
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
     ...
    --- re-building ‘Understanding_lime.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    Quitting from lines 262-263 (Understanding_lime.Rmd)
    Error: processing vignette 'Understanding_lime.Rmd' failed with diagnostics:
    there is no package called 'webshot'
    --- failed re-building ‘Understanding_lime.Rmd’
    
    SUMMARY: processing the following file failed:
     ‘Understanding_lime.Rmd’
    
    Error: Vignette re-building failed.
    Execution halted
Flavor: r-patched-solaris-x86

Version: 0.5.1
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
     ...
    --- re-building ‘Understanding_lime.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    Quitting from lines 262-263 (Understanding_lime.Rmd)
    Error: processing vignette 'Understanding_lime.Rmd' failed with diagnostics:
    cannot open the connection
    --- failed re-building ‘Understanding_lime.Rmd’
    
    SUMMARY: processing the following file failed:
     ‘Understanding_lime.Rmd’
    
    Error: Vignette re-building failed.
    Execution halted
Flavor: r-release-osx-x86_64

Version: 0.5.1
Check: re-building of vignette outputs
Result: WARN
    Error in re-building vignettes:
     ...
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    Quitting from lines 262-263 (Understanding_lime.Rmd)
    Error: processing vignette 'Understanding_lime.Rmd' failed with diagnostics:
    cannot open the connection
    Execution halted
Flavor: r-oldrel-osx-x86_64

Package particles

Current CRAN status: NOTE: 5, OK: 8

Version: 0.2.2
Check: dependencies in R code
Result: NOTE
    Namespace in Imports field not imported from: ‘dplyr’
     All declared Imports should be used.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-solaris-x86, r-release-osx-x86_64, r-oldrel-osx-x86_64

Package patchwork

Current CRAN status: WARN: 1, OK: 12

Version: 1.0.0
Check: whether package can be installed
Result: WARN
    Found the following significant warnings:
     Warning: S3 methods '[.fun_list', '[.grouped_df', 'all.equal.tbl_df', 'anti_join.data.frame', 'anti_join.tbl_df', 'arrange.data.frame', 'arrange.default', 'arrange.grouped_df', 'arrange.tbl_df', 'arrange_.data.frame', 'arrange_.tbl_df', 'as.data.frame.grouped_df', 'as.data.frame.rowwise_df', 'as.data.frame.tbl_cube', 'as.table.tbl_cube', 'as.tbl.data.frame', 'as.tbl.tbl', 'as.tbl_cube.array', 'as.tbl_cube.data.frame', 'as.tbl_cube.matrix', 'as.tbl_cube.table', 'as_tibble.grouped_df', 'as_tibble.tbl_cube', 'auto_copy.tbl_cube', 'auto_copy.tbl_df', 'cbind.grouped_df', 'collapse.data.frame', 'collect.data.frame', 'common_by.NULL', 'common_by.character', 'common_by.default', 'common_by.list', 'compute.data.frame', 'copy_to.DBIConnection', 'copy_to.src_local', 'default_missing.data.frame', 'default_missing.default', 'dim.tbl_cube', 'distinct.data.frame', 'distinct.default', 'distinct.grouped_df', 'distinct.tbl_df', 'distinct_.data.frame', 'distinct_.grouped_df', 'distinct_.tbl_df', 'do.NULL', 'do.da [... truncated]
Flavor: r-oldrel-windows-ix86+x86_64

Package reqres

Current CRAN status: OK: 13

Package routr

Current CRAN status: NOTE: 5, OK: 8

Version: 0.4.0
Check: dependencies in R code
Result: NOTE
    Namespaces in Imports field not imported from:
     ‘httpuv’ ‘utils’
     All declared Imports should be used.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-solaris-x86, r-release-osx-x86_64, r-oldrel-osx-x86_64

Package scico

Current CRAN status: OK: 13

Package shinyFiles

Current CRAN status: OK: 13

Package tidygraph

Current CRAN status: NOTE: 1, OK: 12

Version: 1.1.2
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: ‘graph’
Flavor: r-release-osx-x86_64

Package transformr

Current CRAN status: OK: 13

Package tweenr

Current CRAN status: OK: 13