Provides the ability to create interaction maps, discover CNV map domains (edges), gene annotate interactions, and create interactive visualizations of these CNV interaction maps.
| Version: | 2.9.4 |
| Depends: | R (≥ 3.5.0), ggplot2 |
| Imports: | InteractionSet, BiocManager, tidyr, S4Vectors, circlize, igraph, visNetwork, reshape2, magrittr, htmltools, htmlwidgets, jointseg, plotly, shinyjs, logging, shiny, RCurl, foreach, GenomicFeatures, GenomicInteractions, HiCseg, IRanges, Matrix, OpenImageR, biomaRt, heatmaply, matrixStats, shinythemes, shinycssloaders, spatialfil, GenomicRanges, plyr, data.table, rslurm, dplyr, numbers, rtracklayer, BSgenome.Hsapiens.UCSC.hg19, doParallel, stringr, tibble, GenomeInfoDb |
| Suggests: | knitr, rmarkdown, remotes, pwr, ComplexHeatmap |
| Published: | 2019-12-07 |
| Author: | James Dalgeish, Yonghong Wang, Jack Zhu, Paul Meltzer |
| Maintainer: | James Dalgleish <james.dalgleish at nih.gov> |
| BugReports: | https://github.com/jamesdalg/CNVScope/issues/ |
| License: | BSD_3_clause + file LICENSE |
| URL: | https://github.com/jamesdalg/CNVScope/ |
| NeedsCompilation: | no |
| Materials: | NEWS |
| CRAN checks: | CNVScope results |
| Reference manual: | CNVScope.pdf |
| Vignettes: |
Additional Visualization Examples Creating the TARGET Input matrix from public data Linear Regression/Postprocess Power Analysis |
| Package source: | CNVScope_2.9.4.tar.gz |
| Windows binaries: | r-devel: CNVScope_2.9.4.zip, r-devel-gcc8: CNVScope_2.9.4.zip, r-release: CNVScope_2.9.4.zip, r-oldrel: CNVScope_2.9.4.zip |
| OS X binaries: | r-release: not available, r-oldrel: not available |
| Old sources: | CNVScope archive |
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