Produces a graphical display, as a heat map, of measures of pairwise linkage disequilibria between SNPs. Users may optionally include the physical locations or genetic map distances of each SNP on the plot. Users should note that the imported package 'snpStats' and the suggested packages 'rtracklayer', 'GenomicRanges', 'GenomInfoDb' and 'IRanges' are all BioConductor packages <https://bioconductor.org>.
| Version: | 0.99-7 |
| Depends: | R (≥ 2.14.0) |
| Imports: | grid, genetics, snpStats, Rcpp |
| LinkingTo: | Rcpp |
| Suggests: | rtracklayer, GenomicRanges, GenomeInfoDb, IRanges, lattice, ggplot2, vcfR |
| Published: | 2019-07-14 |
| Author: | Ji-Hyung Shin [aut], Sigal Blay [aut], Nicholas Lewin-Koh [ctb], Brad McNeney [aut, cre], Gloria Yang [ctb], Matthew Reyers [ctb], Youwei Yan [ctb], Jinko Graham [aut] |
| Maintainer: | Brad McNeney <mcneney at sfu.ca> |
| License: | GPL-3 |
| URL: | https://sfustatgen.github.io/LDheatmap/ |
| NeedsCompilation: | yes |
| Citation: | LDheatmap citation info |
| Materials: | ChangeLog |
| In views: | Genetics |
| CRAN checks: | LDheatmap results |
| Reference manual: | LDheatmap.pdf |
| Vignettes: |
LDheatmap LDheatmap adding tracks example |
| Package source: | LDheatmap_0.99-7.tar.gz |
| Windows binaries: | r-devel: LDheatmap_0.99-7.zip, r-devel-gcc8: LDheatmap_0.99-7.zip, r-release: LDheatmap_0.99-7.zip, r-oldrel: LDheatmap_0.99-7.zip |
| OS X binaries: | r-release: LDheatmap_0.99-7.tgz, r-oldrel: LDheatmap_0.99-7.tgz |
| Old sources: | LDheatmap archive |
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