detrendr: Detrend Images

Detrend fluorescence microscopy image series for fluorescence fluctuation and correlation spectroscopy ('FCS' and 'FFS') analysis. This package contains functionality published in a 2016 paper <doi:10.1093/bioinformatics/btx434> but it has been extended since then with the Robin Hood algorithm and thus contains unpublished work.

Version: 0.6.4
Depends: R (≥ 3.1)
Imports: Rcpp (≥ 1.0.1), RcppParallel (≥ 4.4.3), parallel, checkmate (≥ 1.9.3), magrittr (≥ 1.5), dplyr, foreach, doParallel, iterators, purrr, ijtiff (≥ 2.0.2), autothresholdr (≥ 1.3.3), rlang (≥ 0.3.3), stringr (≥ 1.2.0), filesstrings (≥ 3.1.5), plyr, glue (≥ 1.3.0), sigmoid, matrixStats, stringi (≥ 1.3.1), assertthat, withr (≥ 2.1.0), fs (≥ 1.3.1)
LinkingTo: Rcpp (≥ 1.0.1), RcppParallel (≥ 4.4.3)
Suggests: testthat, knitr, rmarkdown, covr, abind, lattice, pacman, tidyr, graphics, gridExtra, arrayhelpers, MASS, mgcv, spelling
Published: 2019-07-08
Author: Rory Nolan ORCID iD [aut, cre], Luis Alvarez ORCID iD [ctb, cph], Sergi Padilla-Parra ORCID iD [ctb, ths, cph]
Maintainer: Rory Nolan <rorynoolan at>
License: BSD_3_clause + file LICENSE
NeedsCompilation: yes
SystemRequirements: GNU make
Language: en-US
Citation: detrendr citation info
Materials: README NEWS
CRAN checks: detrendr results


Reference manual: detrendr.pdf
Vignettes: Batch mode
Linescan data
Detrending single images
Package source: detrendr_0.6.4.tar.gz
Windows binaries: r-devel:, r-devel-gcc8:, r-release:, r-oldrel:
OS X binaries: r-release: detrendr_0.6.4.tgz, r-oldrel: detrendr_0.6.4.tgz
Old sources: detrendr archive

Reverse dependencies:

Reverse imports: nandb


Please use the canonical form to link to this page.