[aut, cre],
U.S. National Science Foundation [fnd]Read depth data from genotyping-by-sequencing (GBS) or restriction site-associated DNA sequencing (RAD-seq) are imported and used to make Bayesian probability estimates of genotypes in polyploids or diploids. The genotype probabilities, or genotypes sampled from those probabilties, can then be exported for downstream analysis. 'polyRAD' is described by Clark et al. (2019) <doi:10.1534/g3.118.200913>.
| Version: | 1.1 |
| Imports: | fastmatch, pcaMethods, methods, Rcpp |
| LinkingTo: | Rcpp |
| Suggests: | rrBLUP, Rsamtools, GenomeInfoDb, Biostrings, GenomicRanges, VariantAnnotation, SummarizedExperiment, S4Vectors, IRanges, BiocGenerics, knitr, rmarkdown, GenomicFeatures, qqman |
| Published: | 2019-06-04 |
| Author: | Lindsay V. Clark
[aut, cre],
U.S. National Science Foundation [fnd] |
| Maintainer: | Lindsay V. Clark <lvclark at illinois.edu> |
| License: | GPL-2 | GPL-3 [expanded from: GPL (≥ 2)] |
| URL: | https://github.com/lvclark/polyRAD |
| NeedsCompilation: | yes |
| Citation: | polyRAD citation info |
| Materials: | NEWS |
| CRAN checks: | polyRAD results |
| Reference manual: | polyRAD.pdf |
| Vignettes: |
polyRAD Tutorial |
| Package source: | polyRAD_1.1.tar.gz |
| Windows binaries: | r-devel: polyRAD_1.1.zip, r-devel-gcc8: polyRAD_1.1.zip, r-release: polyRAD_1.1.zip, r-oldrel: polyRAD_1.1.zip |
| OS X binaries: | r-release: polyRAD_1.1.tgz, r-oldrel: polyRAD_1.1.tgz |
| Old sources: | polyRAD archive |
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