CRAN Package Check Results for Package holodeck

Last updated on 2020-03-27 00:49:24 CET.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.2.0 3.91 114.92 118.83 OK
r-devel-linux-x86_64-debian-gcc 0.2.0 2.79 81.39 84.18 OK
r-devel-linux-x86_64-fedora-clang 0.2.0 132.47 OK
r-devel-linux-x86_64-fedora-gcc 0.2.0 140.00 OK
r-devel-windows-ix86+x86_64 0.2.0 13.00 53.00 66.00 WARN
r-devel-windows-ix86+x86_64-gcc8 0.2.0 11.00 121.00 132.00 OK
r-patched-linux-x86_64 0.2.0 2.89 98.32 101.21 OK
r-patched-solaris-x86 0.2.0 87.70 WARN
r-release-linux-x86_64 0.2.0 3.11 97.92 101.03 OK
r-release-windows-ix86+x86_64 0.2.0 17.00 160.00 177.00 OK
r-release-osx-x86_64 0.2.0 WARN
r-oldrel-windows-ix86+x86_64 0.2.0 13.00 170.00 183.00 OK
r-oldrel-osx-x86_64 0.2.0 WARN

Check Details

Version: 0.2.0
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
    --- re-building 'simulating-data.Rmd' using rmarkdown
    
    Attaching package: 'dplyr'
    
    The following objects are masked from 'package:stats':
    
     filter, lag
    
    The following objects are masked from 'package:base':
    
     intersect, setdiff, setequal, union
    
    Loading required package: Biobase
    Loading required package: BiocGenerics
    Loading required package: parallel
    
    Attaching package: 'BiocGenerics'
    
    The following objects are masked from 'package:parallel':
    
     clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
     clusterExport, clusterMap, parApply, parCapply, parLapply,
     parLapplyLB, parRapply, parSapply, parSapplyLB
    
    The following objects are masked from 'package:dplyr':
    
     combine, intersect, setdiff, union
    
    The following objects are masked from 'package:stats':
    
     IQR, mad, sd, var, xtabs
    
    The following objects are masked from 'package:base':
    
     Filter, Find, Map, Position, Reduce, anyDuplicated, append,
     as.data.frame, basename, cbind, colnames, dirname, do.call,
     duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
     lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin,
     pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table,
     tapply, union, unique, unsplit, which, which.max, which.min
    
    Welcome to Bioconductor
    
     Vignettes contain introductory material; view with
     'browseVignettes()'. To cite Bioconductor, see
     'citation("Biobase")', and for packages 'citation("pkgname")'.
    
    Quitting from lines 25-31 (simulating-data.Rmd)
    Error: processing vignette 'simulating-data.Rmd' failed with diagnostics:
    package or namespace load failed for 'iheatmapr':
     .onLoad failed in loadNamespace() for 'S4Vectors', details:
     call: validObject(.Object)
     error: invalid class "LLint" object: superclass "integer_OR_LLint" not defined in the environment of the object's class
    --- failed re-building 'simulating-data.Rmd'
    
    SUMMARY: processing the following file failed:
     'simulating-data.Rmd'
    
    Error: Vignette re-building failed.
    Execution halted
Flavor: r-devel-windows-ix86+x86_64

Version: 0.2.0
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
     ...
    --- re-building ‘simulating-data.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    
    Attaching package: 'dplyr'
    
    The following objects are masked from 'package:stats':
    
     filter, lag
    
    The following objects are masked from 'package:base':
    
     intersect, setdiff, setequal, union
    
    Loading required package: Biobase
    Loading required package: BiocGenerics
    Loading required package: parallel
    
    Attaching package: 'BiocGenerics'
    
    The following objects are masked from 'package:parallel':
    
     clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
     clusterExport, clusterMap, parApply, parCapply, parLapply,
     parLapplyLB, parRapply, parSapply, parSapplyLB
    
    The following objects are masked from 'package:dplyr':
    
     combine, intersect, setdiff, union
    
    The following objects are masked from 'package:stats':
    
     IQR, mad, sd, var, xtabs
    
    The following objects are masked from 'package:base':
    
     Filter, Find, Map, Position, Reduce, anyDuplicated, append,
     as.data.frame, basename, cbind, colnames, dirname, do.call,
     duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
     lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin,
     pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table,
     tapply, union, unique, unsplit, which, which.max, which.min
    
    Welcome to Bioconductor
    
     Vignettes contain introductory material; view with
     'browseVignettes()'. To cite Bioconductor, see
     'citation("Biobase")', and for packages 'citation("pkgname")'.
    
    
    Attaching package: 'mice'
    
    The following objects are masked from 'package:BiocGenerics':
    
     cbind, rbind
    
    The following objects are masked from 'package:base':
    
     cbind, rbind
    
    Quitting from lines 109-113 (simulating-data.Rmd)
    Error: processing vignette 'simulating-data.Rmd' failed with diagnostics:
    there is no package called 'webshot'
    --- failed re-building ‘simulating-data.Rmd’
    
    SUMMARY: processing the following file failed:
     ‘simulating-data.Rmd’
    
    Error: Vignette re-building failed.
    Execution halted
Flavor: r-patched-solaris-x86

Version: 0.2.0
Check: package dependencies
Result: NOTE
    Packages suggested but not available for checking: 'iheatmapr', 'ropls'
Flavor: r-release-osx-x86_64

Version: 0.2.0
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
     ...
    --- re-building ‘simulating-data.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    
    Attaching package: 'dplyr'
    
    The following objects are masked from 'package:stats':
    
     filter, lag
    
    The following objects are masked from 'package:base':
    
     intersect, setdiff, setequal, union
    
    Quitting from lines 25-31 (simulating-data.Rmd)
    Error: processing vignette 'simulating-data.Rmd' failed with diagnostics:
    there is no package called 'ropls'
    --- failed re-building ‘simulating-data.Rmd’
    
    SUMMARY: processing the following file failed:
     ‘simulating-data.Rmd’
    
    Error: Vignette re-building failed.
    Execution halted
Flavor: r-release-osx-x86_64

Version: 0.2.0
Check: re-building of vignette outputs
Result: WARN
    Error in re-building vignettes:
     ...
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    
    Attaching package: 'dplyr'
    
    The following objects are masked from 'package:stats':
    
     filter, lag
    
    The following objects are masked from 'package:base':
    
     intersect, setdiff, setequal, union
    
    Loading required package: lattice
    
    Attaching package: 'mice'
    
    The following objects are masked from 'package:base':
    
     cbind, rbind
    
    Quitting from lines 109-113 (simulating-data.Rmd)
    Error: processing vignette 'simulating-data.Rmd' failed with diagnostics:
    cannot open the connection
    Execution halted
Flavor: r-oldrel-osx-x86_64