Functions to simplify the analysis and prediction of Antimicrobial Resistance (AMR) and to work with microbial and antimicrobial properties by using evidence-based methods, like those defined by Leclercq et al. (2013) <doi:10.1111/j.1469-0691.2011.03703.x> and the Clinical and Laboratory Standards Institute (2014) <isbn: 1-56238-899-1>.
| Version: | 1.0.1 |
| Depends: | R (≥ 3.1.0) |
| Imports: | backports, cleaner, crayon (≥ 1.3.0), data.table (≥ 1.9.0), dplyr (≥ 0.7.0), ggplot2, knitr (≥ 1.0.0), microbenchmark, pillar, rlang (≥ 0.3.1), tidyr (≥ 1.0.0) |
| Suggests: | covr (≥ 3.0.1), curl, readxl, rmarkdown, rstudioapi, rvest (≥ 0.3.2), testthat (≥ 1.0.2), xml2 (≥ 1.0.0) |
| Published: | 2020-02-23 |
| Author: | Matthijs S. Berends
 [aut, cre],
Christian F. Luz
[aut, ctb],
Alexander W. Friedrich
[aut, ths],
Bhanu N. M. Sinha
[aut, ths],
Casper J. Albers
[aut, ths],
Corinna Glasner
[aut, ths],
Judith M. Fonville [ctb],
Erwin E. A. Hassing [ctb],
Eric H. L. C. M. Hazenberg [ctb],
Annick Lenglet [ctb],
Bart C. Meijer [ctb],
Sofia Ny [ctb],
Dennis Souverein [ctb] |
| Maintainer: | Matthijs S. Berends <m.s.berends at umcg.nl> |
| BugReports: | https://gitlab.com/msberends/AMR/issues |
| License: | GPL-2 | file LICENSE |
| URL: | https://msberends.gitlab.io/AMR, https://gitlab.com/msberends/AMR |
| NeedsCompilation: | no |
| Citation: | AMR citation info |
| Materials: | README NEWS |
| CRAN checks: | AMR results |
| Reference manual: | AMR.pdf |
| Vignettes: |
How to conduct AMR analysis How to apply EUCAST rules How to determine multi-drug resistance (MDR) How to work with WHONET data How to predict antimicrobial resistance |
| Package source: | AMR_1.0.1.tar.gz |
| Windows binaries: | r-devel: AMR_1.0.1.zip, r-devel-gcc8: AMR_1.0.1.zip, r-release: AMR_1.0.1.zip, r-oldrel: AMR_1.0.1.zip |
| OS X binaries: | r-release: AMR_1.0.1.tgz, r-oldrel: AMR_1.0.1.tgz |
| Old sources: | AMR archive |
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