geiger: Analysis of Evolutionary Diversification

Methods for fitting macroevolutionary models to phylogenetic trees Pennell (2014) <doi:10.1093/bioinformatics/btu181>.

Depends: ape (≥ 3.0-6), R (≥ 2.15.0)
Imports: MASS, mvtnorm, subplex, deSolve (≥ 1.7), digest, Rcpp (≥ 0.11.0), coda, ncbit, colorspace, methods
LinkingTo: Rcpp
Published: 2020-01-25
Author: Luke Harmon, Matthew Pennell, Jason Weir, Chad Brock, Rich Glor, Wendell Challenger, Gene Hunt, Rich FitzJohn, Graham Slater, Joseph Brown, Josef Uyeda, and Jon Eastman
Maintainer: Luke Harmon <lukeh at>
License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
NeedsCompilation: yes
Citation: geiger citation info
Materials: README ChangeLog
In views: Phylogenetics
CRAN checks: geiger results


Reference manual: geiger.pdf
Package source: geiger_2.0.6.4.tar.gz
Windows binaries: r-devel:, r-devel-gcc8:, r-release:, r-oldrel:
OS X binaries: r-release: geiger_2.0.6.4.tgz, r-oldrel: geiger_2.0.6.4.tgz
Old sources: geiger archive

Reverse dependencies:

Reverse depends: convevol, iteRates, OUwie, TreeSim, windex
Reverse imports: dispRity, evobiR, hilldiv, nichevol, ouxy, PhyInformR, phylocurve, pmc, ratematrix, RPANDA, Rphylopars, RRphylo, secsse, sensiPhy, treeplyr
Reverse suggests: BBMV, diversitree, fishtree, ouch, pcmabc, phytools, RNeXML, tracerer


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