incidence: Compute, Handle, Plot and Model Incidence of Dated Events

Provides functions and classes to compute, handle and visualise incidence from dated events for a defined time interval. Dates can be provided in various standard formats. The class 'incidence' is used to store computed incidence and can be easily manipulated, subsetted, and plotted. In addition, log-linear models can be fitted to 'incidence' objects using 'fit'. This package is part of the RECON (<>) toolkit for outbreak analysis.

Version: 1.7.1
Imports: ggplot2, aweek (≥ 0.2.0)
Suggests: magrittr, outbreaks, testthat, vdiffr, covr, knitr, rmarkdown, scales, cowplot
Published: 2020-03-25
Author: Thibaut Jombart [aut], Zhian N. Kamvar ORCID iD [aut, cre], Rich FitzJohn [aut], Jun Cai ORCID iD [ctb], Sangeeta Bhatia [ctb], Jakob Schumacher [ctb], Juliet R.C. Pulliam ORCID iD [ctb]
Maintainer: Zhian N. Kamvar <zkamvar at>
License: MIT + file LICENSE
NeedsCompilation: no
Citation: incidence citation info
Materials: NEWS
CRAN checks: incidence results


Reference manual: incidence.pdf
Vignettes: Conversions
Customise graphics
Incidence class
Incidence fit class
Package source: incidence_1.7.1.tar.gz
Windows binaries: r-devel:, r-devel-gcc8:, r-release:, r-oldrel:
OS X binaries: r-release: incidence_1.7.0.tgz, r-oldrel: incidence_1.7.0.tgz
Old sources: incidence archive

Reverse dependencies:

Reverse imports: EpiEstim, projections
Reverse suggests: earlyR, epitrix, outbreaks


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