Multi-caller variant analysis pipeline for targeted analysis sequencing (TAS) data. Features a modular, automated workflow that can start with raw reads and produces a user-friendly PDF summary and a spreadsheet containing consensus variant information.
Version: | 0.0.1 |
Imports: | stringr, dplyr, yaml, openxlsx, VennDiagram, assertthat, magrittr, tools, utils, tidyr, doParallel, foreach |
Suggests: | testthat, knitr, rmarkdown, futile.logger |
Published: | 2020-02-21 |
Author: | Adam Mills [aut, cre], Erle Holgersen [aut], Ros Cutts [aut], Syed Haider [aut] |
Maintainer: | Adam Mills <Adam.Mills at icr.ac.uk> |
License: | GPL-2 |
NeedsCompilation: | no |
SystemRequirements: | perl, bedtools (>=2.27.1), bwa |
Materials: | NEWS |
CRAN checks: | varitas results |
Reference manual: | varitas.pdf |
Vignettes: |
Errors Introduction |
Package source: | varitas_0.0.1.tar.gz |
Windows binaries: | r-devel: varitas_0.0.1.zip, r-devel-gcc8: varitas_0.0.1.zip, r-release: varitas_0.0.1.zip, r-oldrel: varitas_0.0.1.zip |
OS X binaries: | r-release: varitas_0.0.1.tgz, r-oldrel: varitas_0.0.1.tgz |
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