CRAN Package Check Results for Package constellation

Last updated on 2020-07-02 02:09:45 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.2.0 3.41 43.94 47.35 ERROR
r-devel-linux-x86_64-debian-gcc 0.2.0 2.67 41.93 44.60 ERROR
r-devel-linux-x86_64-fedora-clang 0.2.0 59.92 ERROR
r-devel-linux-x86_64-fedora-gcc 0.2.0 50.36 ERROR
r-devel-windows-ix86+x86_64 0.2.0 10.00 47.00 57.00 ERROR
r-patched-linux-x86_64 0.2.0 3.17 46.64 49.81 ERROR
r-patched-solaris-x86 0.2.0 69.00 ERROR
r-release-linux-x86_64 0.2.0 3.02 44.07 47.09 ERROR
r-release-osx-x86_64 0.2.0 ERROR
r-release-windows-ix86+x86_64 0.2.0 9.00 47.00 56.00 ERROR
r-oldrel-osx-x86_64 0.2.0 OK
r-oldrel-windows-ix86+x86_64 0.2.0 6.00 86.00 92.00 OK

Check Details

Version: 0.2.0
Check: examples
Result: ERROR
    Running examples in 'constellation-Ex.R' failed
    The error most likely occurred in:
    
    > base::assign(".ptime", proc.time(), pos = "CheckExEnv")
    > ### Name: bundle
    > ### Title: Identify bundle items that occur around a given event
    > ### Aliases: bundle
    >
    > ### ** Examples
    >
    > library(data.table)
    > temp <- as.data.table(vitals[VARIABLE == "TEMPERATURE"])
    > pulse <- as.data.table(vitals[VARIABLE == "PULSE"])
    > resp <- as.data.table(vitals[VARIABLE == "RESPIRATORY_RATE"])
    >
    > temp[, RECORDED_TIME := as.POSIXct(RECORDED_TIME,
    + format = "%Y-%m-%dT%H:%M:%SZ", tz = "UTC")]
    > pulse[, RECORDED_TIME := as.POSIXct(RECORDED_TIME,
    + format = "%Y-%m-%dT%H:%M:%SZ", tz = "UTC")]
    > resp[, RECORDED_TIME := as.POSIXct(RECORDED_TIME,
    + format = "%Y-%m-%dT%H:%M:%SZ", tz = "UTC")]
    >
    > # Pass single window_hours_pre
    > # All instances of bundle items within time window of event
    > bundle(temp, pulse, resp,
    + bundle_names = c("PLATELETS", "INR"), window_hours_pre = 24,
    + window_hours_post = c(6, 6), join_key = "PAT_ID",
    + time_var = "RECORDED_TIME", event_name = "CREATININE", mult = "all")
    Error in as.POSIXct.numeric(e) : 'origin' must be supplied
    Calls: bundle ... unlist -> lapply -> FUN -> as.POSIXct -> as.POSIXct.numeric
    Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 0.2.0
Check: tests
Result: ERROR
     Running 'testthat.R' [13s/7s]
    Running the tests in 'tests/testthat.R' failed.
    Complete output:
     > library(testthat)
     > library(constellation)
     >
     > test_check("constellation")
     -- 1. Error: bundle produces expected values for test patient (@test-bundle.R#43
     'origin' must be supplied
     Backtrace:
     1. testthat::expect_equal(...)
     5. constellation::bundle(...)
     6. data.table::foverlaps(...)
     9. data.table:::`[.data.table`(y, , eval(call))
     10. [ base::eval(...) ] with 1 more call
     13. base::c.POSIXct(...)
     16. base::lapply(list(...), function(e) unclass(as.POSIXct(e)))
     17. base:::FUN(X[[i]], ...)
     19. base::as.POSIXct.numeric(e)
    
     -- 2. Error: bundle names assign properly (@test-bundle.R#130) ----------------
     'origin' must be supplied
     Backtrace:
     1. testthat::expect_equal(...)
     5. constellation::bundle(...)
     6. data.table::foverlaps(...)
     9. data.table:::`[.data.table`(y, , eval(call))
     10. [ base::eval(...) ] with 1 more call
     13. base::c.POSIXct(...)
     16. base::lapply(list(...), function(e) unclass(as.POSIXct(e)))
     17. base:::FUN(X[[i]], ...)
     19. base::as.POSIXct.numeric(e)
    
     -- 3. Error: event name assigns properly (@test-bundle.R#162) -----------------
     'origin' must be supplied
     Backtrace:
     1. testthat::expect_equal(...)
     5. constellation::bundle(...)
     6. data.table::foverlaps(...)
     9. data.table:::`[.data.table`(y, , eval(call))
     10. [ base::eval(...) ] with 1 more call
     13. base::c.POSIXct(...)
     16. base::lapply(list(...), function(e) unclass(as.POSIXct(e)))
     17. base:::FUN(X[[i]], ...)
     19. base::as.POSIXct.numeric(e)
    
     -- 4. Error: window hours roll over (@test-bundle.R#173) ----------------------
     'origin' must be supplied
     Backtrace:
     1. testthat::expect_equal(...)
     4. constellation::bundle(...)
     5. data.table::foverlaps(...)
     8. data.table:::`[.data.table`(y, , eval(call))
     9. [ base::eval(...) ] with 1 more call
     12. base::c.POSIXct(...)
     15. base::lapply(list(...), function(e) unclass(as.POSIXct(e)))
     16. base:::FUN(X[[i]], ...)
     18. base::as.POSIXct.numeric(e)
    
     -- 5. Error: default arguments function properly (@test-bundle.R#209) ---------
     'origin' must be supplied
     Backtrace:
     1. testthat::expect_equal(...)
     4. constellation::bundle(...)
     5. data.table::foverlaps(...)
     8. data.table:::`[.data.table`(y, , eval(call))
     9. [ base::eval(...) ] with 1 more call
     12. base::c.POSIXct(...)
     15. base::lapply(list(...), function(e) unclass(as.POSIXct(e)))
     16. base:::FUN(X[[i]], ...)
     18. base::as.POSIXct.numeric(e)
    
     -- 6. Error: value change produces expected values for test patient (@test-value
     'origin' must be supplied
     Backtrace:
     1. testthat::expect_equal(...)
     4. constellation::value_change(...)
     5. data.table::foverlaps(data, prior_data)
     8. data.table:::`[.data.table`(y, , eval(call))
     9. [ base::eval(...) ] with 1 more call
     12. base::c.POSIXct(...)
     15. base::lapply(list(...), function(e) unclass(as.POSIXct(e)))
     16. base:::FUN(X[[i]], ...)
     18. base::as.POSIXct.numeric(e)
    
     -- 7. Error: default arguments function properly (@test-value_change.R#54) ----
     'origin' must be supplied
     Backtrace:
     1. testthat::expect_equal(...)
     4. constellation::value_change(...)
     5. data.table::foverlaps(data, prior_data)
     8. data.table:::`[.data.table`(y, , eval(call))
     9. [ base::eval(...) ] with 1 more call
     12. base::c.POSIXct(...)
     15. base::lapply(list(...), function(e) unclass(as.POSIXct(e)))
     16. base:::FUN(X[[i]], ...)
     18. base::as.POSIXct.numeric(e)
    
     == testthat results ===========================================================
     [ OK: 94 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 7 ]
     1. Error: bundle produces expected values for test patient (@test-bundle.R#43)
     2. Error: bundle names assign properly (@test-bundle.R#130)
     3. Error: event name assigns properly (@test-bundle.R#162)
     4. Error: window hours roll over (@test-bundle.R#173)
     5. Error: default arguments function properly (@test-bundle.R#209)
     6. Error: value change produces expected values for test patient (@test-value_change.R#25)
     7. Error: default arguments function properly (@test-value_change.R#54)
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-devel-linux-x86_64-debian-clang

Version: 0.2.0
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
     ...
    --- re-building 'identify_sepsis.Rmd' using rmarkdown
    Quitting from lines 70-76 (identify_sepsis.Rmd)
    Error: processing vignette 'identify_sepsis.Rmd' failed with diagnostics:
    'origin' must be supplied
    --- failed re-building 'identify_sepsis.Rmd'
    
    SUMMARY: processing the following file failed:
     'identify_sepsis.Rmd'
    
    Error: Vignette re-building failed.
    Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-osx-x86_64

Version: 0.2.0
Check: tests
Result: ERROR
     Running ‘testthat.R’ [18s/19s]
    Running the tests in ‘tests/testthat.R’ failed.
    Complete output:
     > library(testthat)
     > library(constellation)
     >
     > test_check("constellation")
     ── 1. Error: bundle produces expected values for test patient (@test-bundle.R#43
     'origin' must be supplied
     Backtrace:
     1. testthat::expect_equal(...)
     5. constellation::bundle(...)
     6. data.table::foverlaps(...)
     9. data.table:::`[.data.table`(y, , eval(call))
     10. [ base::eval(...) ] with 1 more call
     13. base::c.POSIXct(...)
     16. base::lapply(list(...), function(e) unclass(as.POSIXct(e)))
     17. base:::FUN(X[[i]], ...)
     19. base::as.POSIXct.numeric(e)
    
     ── 2. Error: bundle names assign properly (@test-bundle.R#130) ────────────────
     'origin' must be supplied
     Backtrace:
     1. testthat::expect_equal(...)
     5. constellation::bundle(...)
     6. data.table::foverlaps(...)
     9. data.table:::`[.data.table`(y, , eval(call))
     10. [ base::eval(...) ] with 1 more call
     13. base::c.POSIXct(...)
     16. base::lapply(list(...), function(e) unclass(as.POSIXct(e)))
     17. base:::FUN(X[[i]], ...)
     19. base::as.POSIXct.numeric(e)
    
     ── 3. Error: event name assigns properly (@test-bundle.R#162) ─────────────────
     'origin' must be supplied
     Backtrace:
     1. testthat::expect_equal(...)
     5. constellation::bundle(...)
     6. data.table::foverlaps(...)
     9. data.table:::`[.data.table`(y, , eval(call))
     10. [ base::eval(...) ] with 1 more call
     13. base::c.POSIXct(...)
     16. base::lapply(list(...), function(e) unclass(as.POSIXct(e)))
     17. base:::FUN(X[[i]], ...)
     19. base::as.POSIXct.numeric(e)
    
     ── 4. Error: window hours roll over (@test-bundle.R#173) ──────────────────────
     'origin' must be supplied
     Backtrace:
     1. testthat::expect_equal(...)
     4. constellation::bundle(...)
     5. data.table::foverlaps(...)
     8. data.table:::`[.data.table`(y, , eval(call))
     9. [ base::eval(...) ] with 1 more call
     12. base::c.POSIXct(...)
     15. base::lapply(list(...), function(e) unclass(as.POSIXct(e)))
     16. base:::FUN(X[[i]], ...)
     18. base::as.POSIXct.numeric(e)
    
     ── 5. Error: default arguments function properly (@test-bundle.R#209) ─────────
     'origin' must be supplied
     Backtrace:
     1. testthat::expect_equal(...)
     4. constellation::bundle(...)
     5. data.table::foverlaps(...)
     8. data.table:::`[.data.table`(y, , eval(call))
     9. [ base::eval(...) ] with 1 more call
     12. base::c.POSIXct(...)
     15. base::lapply(list(...), function(e) unclass(as.POSIXct(e)))
     16. base:::FUN(X[[i]], ...)
     18. base::as.POSIXct.numeric(e)
    
     ── 6. Error: value change produces expected values for test patient (@test-value
     'origin' must be supplied
     Backtrace:
     1. testthat::expect_equal(...)
     4. constellation::value_change(...)
     5. data.table::foverlaps(data, prior_data)
     8. data.table:::`[.data.table`(y, , eval(call))
     9. [ base::eval(...) ] with 1 more call
     12. base::c.POSIXct(...)
     15. base::lapply(list(...), function(e) unclass(as.POSIXct(e)))
     16. base:::FUN(X[[i]], ...)
     18. base::as.POSIXct.numeric(e)
    
     ── 7. Error: default arguments function properly (@test-value_change.R#54) ────
     'origin' must be supplied
     Backtrace:
     1. testthat::expect_equal(...)
     4. constellation::value_change(...)
     5. data.table::foverlaps(data, prior_data)
     8. data.table:::`[.data.table`(y, , eval(call))
     9. [ base::eval(...) ] with 1 more call
     12. base::c.POSIXct(...)
     15. base::lapply(list(...), function(e) unclass(as.POSIXct(e)))
     16. base:::FUN(X[[i]], ...)
     18. base::as.POSIXct.numeric(e)
    
     ══ testthat results ═══════════════════════════════════════════════════════════
     [ OK: 94 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 7 ]
     1. Error: bundle produces expected values for test patient (@test-bundle.R#43)
     2. Error: bundle names assign properly (@test-bundle.R#130)
     3. Error: event name assigns properly (@test-bundle.R#162)
     4. Error: window hours roll over (@test-bundle.R#173)
     5. Error: default arguments function properly (@test-bundle.R#209)
     6. Error: value change produces expected values for test patient (@test-value_change.R#25)
     7. Error: default arguments function properly (@test-value_change.R#54)
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc

Version: 0.2.0
Check: examples
Result: ERROR
    Running examples in ‘constellation-Ex.R’ failed
    The error most likely occurred in:
    
    > ### Name: bundle
    > ### Title: Identify bundle items that occur around a given event
    > ### Aliases: bundle
    >
    > ### ** Examples
    >
    > library(data.table)
    > temp <- as.data.table(vitals[VARIABLE == "TEMPERATURE"])
    > pulse <- as.data.table(vitals[VARIABLE == "PULSE"])
    > resp <- as.data.table(vitals[VARIABLE == "RESPIRATORY_RATE"])
    >
    > temp[, RECORDED_TIME := as.POSIXct(RECORDED_TIME,
    + format = "%Y-%m-%dT%H:%M:%SZ", tz = "UTC")]
    > pulse[, RECORDED_TIME := as.POSIXct(RECORDED_TIME,
    + format = "%Y-%m-%dT%H:%M:%SZ", tz = "UTC")]
    > resp[, RECORDED_TIME := as.POSIXct(RECORDED_TIME,
    + format = "%Y-%m-%dT%H:%M:%SZ", tz = "UTC")]
    >
    > # Pass single window_hours_pre
    > # All instances of bundle items within time window of event
    > bundle(temp, pulse, resp,
    + bundle_names = c("PLATELETS", "INR"), window_hours_pre = 24,
    + window_hours_post = c(6, 6), join_key = "PAT_ID",
    + time_var = "RECORDED_TIME", event_name = "CREATININE", mult = "all")
    Error in as.POSIXct.numeric(e) : 'origin' must be supplied
    Calls: bundle ... unlist -> lapply -> FUN -> as.POSIXct -> as.POSIXct.numeric
    Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-solaris-x86, r-release-osx-x86_64, r-release-windows-ix86+x86_64

Version: 0.2.0
Check: tests
Result: ERROR
     Running ‘testthat.R’
    Running the tests in ‘tests/testthat.R’ failed.
    Complete output:
     > library(testthat)
     > library(constellation)
     >
     > test_check("constellation")
     ── 1. Error: bundle produces expected values for test patient (@test-bundle.R#43
     'origin' must be supplied
     Backtrace:
     1. testthat::expect_equal(...)
     5. constellation::bundle(...)
     6. data.table::foverlaps(...)
     9. data.table:::`[.data.table`(y, , eval(call))
     10. [ base::eval(...) ] with 1 more call
     13. base::c.POSIXct(...)
     16. base::lapply(list(...), function(e) unclass(as.POSIXct(e)))
     17. base:::FUN(X[[i]], ...)
     19. base::as.POSIXct.numeric(e)
    
     ── 2. Error: bundle names assign properly (@test-bundle.R#130) ────────────────
     'origin' must be supplied
     Backtrace:
     1. testthat::expect_equal(...)
     5. constellation::bundle(...)
     6. data.table::foverlaps(...)
     9. data.table:::`[.data.table`(y, , eval(call))
     10. [ base::eval(...) ] with 1 more call
     13. base::c.POSIXct(...)
     16. base::lapply(list(...), function(e) unclass(as.POSIXct(e)))
     17. base:::FUN(X[[i]], ...)
     19. base::as.POSIXct.numeric(e)
    
     ── 3. Error: event name assigns properly (@test-bundle.R#162) ─────────────────
     'origin' must be supplied
     Backtrace:
     1. testthat::expect_equal(...)
     5. constellation::bundle(...)
     6. data.table::foverlaps(...)
     9. data.table:::`[.data.table`(y, , eval(call))
     10. [ base::eval(...) ] with 1 more call
     13. base::c.POSIXct(...)
     16. base::lapply(list(...), function(e) unclass(as.POSIXct(e)))
     17. base:::FUN(X[[i]], ...)
     19. base::as.POSIXct.numeric(e)
    
     ── 4. Error: window hours roll over (@test-bundle.R#173) ──────────────────────
     'origin' must be supplied
     Backtrace:
     1. testthat::expect_equal(...)
     4. constellation::bundle(...)
     5. data.table::foverlaps(...)
     8. data.table:::`[.data.table`(y, , eval(call))
     9. [ base::eval(...) ] with 1 more call
     12. base::c.POSIXct(...)
     15. base::lapply(list(...), function(e) unclass(as.POSIXct(e)))
     16. base:::FUN(X[[i]], ...)
     18. base::as.POSIXct.numeric(e)
    
     ── 5. Error: default arguments function properly (@test-bundle.R#209) ─────────
     'origin' must be supplied
     Backtrace:
     1. testthat::expect_equal(...)
     4. constellation::bundle(...)
     5. data.table::foverlaps(...)
     8. data.table:::`[.data.table`(y, , eval(call))
     9. [ base::eval(...) ] with 1 more call
     12. base::c.POSIXct(...)
     15. base::lapply(list(...), function(e) unclass(as.POSIXct(e)))
     16. base:::FUN(X[[i]], ...)
     18. base::as.POSIXct.numeric(e)
    
     ── 6. Error: value change produces expected values for test patient (@test-value
     'origin' must be supplied
     Backtrace:
     1. testthat::expect_equal(...)
     4. constellation::value_change(...)
     5. data.table::foverlaps(data, prior_data)
     8. data.table:::`[.data.table`(y, , eval(call))
     9. [ base::eval(...) ] with 1 more call
     12. base::c.POSIXct(...)
     15. base::lapply(list(...), function(e) unclass(as.POSIXct(e)))
     16. base:::FUN(X[[i]], ...)
     18. base::as.POSIXct.numeric(e)
    
     ── 7. Error: default arguments function properly (@test-value_change.R#54) ────
     'origin' must be supplied
     Backtrace:
     1. testthat::expect_equal(...)
     4. constellation::value_change(...)
     5. data.table::foverlaps(data, prior_data)
     8. data.table:::`[.data.table`(y, , eval(call))
     9. [ base::eval(...) ] with 1 more call
     12. base::c.POSIXct(...)
     15. base::lapply(list(...), function(e) unclass(as.POSIXct(e)))
     16. base:::FUN(X[[i]], ...)
     18. base::as.POSIXct.numeric(e)
    
     ══ testthat results ═══════════════════════════════════════════════════════════
     [ OK: 94 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 7 ]
     1. Error: bundle produces expected values for test patient (@test-bundle.R#43)
     2. Error: bundle names assign properly (@test-bundle.R#130)
     3. Error: event name assigns properly (@test-bundle.R#162)
     4. Error: window hours roll over (@test-bundle.R#173)
     5. Error: default arguments function properly (@test-bundle.R#209)
     6. Error: value change produces expected values for test patient (@test-value_change.R#25)
     7. Error: default arguments function properly (@test-value_change.R#54)
    
     Error: testthat unit tests failed
     Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-patched-solaris-x86

Version: 0.2.0
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
    --- re-building ‘identify_sepsis.Rmd’ using rmarkdown
    Quitting from lines 70-76 (identify_sepsis.Rmd)
    Error: processing vignette 'identify_sepsis.Rmd' failed with diagnostics:
    'origin' must be supplied
    --- failed re-building ‘identify_sepsis.Rmd’
    
    SUMMARY: processing the following file failed:
     ‘identify_sepsis.Rmd’
    
    Error: Vignette re-building failed.
    Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-release-windows-ix86+x86_64

Version: 0.2.0
Check: tests
Result: ERROR
     Running ‘testthat.R’ [10s/10s]
    Running the tests in ‘tests/testthat.R’ failed.
    Complete output:
     > library(testthat)
     > library(constellation)
     >
     > test_check("constellation")
     ── 1. Error: bundle produces expected values for test patient (@test-bundle.R#43
     'origin' must be supplied
     Backtrace:
     1. testthat::expect_equal(...)
     5. constellation::bundle(...)
     6. data.table::foverlaps(...)
     9. data.table:::`[.data.table`(y, , eval(call))
     10. [ base::eval(...) ] with 1 more call
     13. base::c.POSIXct(...)
     16. base::lapply(list(...), function(e) unclass(as.POSIXct(e)))
     17. base:::FUN(X[[i]], ...)
     19. base::as.POSIXct.numeric(e)
    
     ── 2. Error: bundle names assign properly (@test-bundle.R#130) ────────────────
     'origin' must be supplied
     Backtrace:
     1. testthat::expect_equal(...)
     5. constellation::bundle(...)
     6. data.table::foverlaps(...)
     9. data.table:::`[.data.table`(y, , eval(call))
     10. [ base::eval(...) ] with 1 more call
     13. base::c.POSIXct(...)
     16. base::lapply(list(...), function(e) unclass(as.POSIXct(e)))
     17. base:::FUN(X[[i]], ...)
     19. base::as.POSIXct.numeric(e)
    
     ── 3. Error: event name assigns properly (@test-bundle.R#162) ─────────────────
     'origin' must be supplied
     Backtrace:
     1. testthat::expect_equal(...)
     5. constellation::bundle(...)
     6. data.table::foverlaps(...)
     9. data.table:::`[.data.table`(y, , eval(call))
     10. [ base::eval(...) ] with 1 more call
     13. base::c.POSIXct(...)
     16. base::lapply(list(...), function(e) unclass(as.POSIXct(e)))
     17. base:::FUN(X[[i]], ...)
     19. base::as.POSIXct.numeric(e)
    
     ── 4. Error: window hours roll over (@test-bundle.R#173) ──────────────────────
     'origin' must be supplied
     Backtrace:
     1. testthat::expect_equal(...)
     4. constellation::bundle(...)
     5. data.table::foverlaps(...)
     8. data.table:::`[.data.table`(y, , eval(call))
     9. [ base::eval(...) ] with 1 more call
     12. base::c.POSIXct(...)
     15. base::lapply(list(...), function(e) unclass(as.POSIXct(e)))
     16. base:::FUN(X[[i]], ...)
     18. base::as.POSIXct.numeric(e)
    
     ── 5. Error: default arguments function properly (@test-bundle.R#209) ─────────
     'origin' must be supplied
     Backtrace:
     1. testthat::expect_equal(...)
     4. constellation::bundle(...)
     5. data.table::foverlaps(...)
     8. data.table:::`[.data.table`(y, , eval(call))
     9. [ base::eval(...) ] with 1 more call
     12. base::c.POSIXct(...)
     15. base::lapply(list(...), function(e) unclass(as.POSIXct(e)))
     16. base:::FUN(X[[i]], ...)
     18. base::as.POSIXct.numeric(e)
    
     ── 6. Error: value change produces expected values for test patient (@test-value
     'origin' must be supplied
     Backtrace:
     1. testthat::expect_equal(...)
     4. constellation::value_change(...)
     5. data.table::foverlaps(data, prior_data)
     8. data.table:::`[.data.table`(y, , eval(call))
     9. [ base::eval(...) ] with 1 more call
     12. base::c.POSIXct(...)
     15. base::lapply(list(...), function(e) unclass(as.POSIXct(e)))
     16. base:::FUN(X[[i]], ...)
     18. base::as.POSIXct.numeric(e)
    
     ── 7. Error: default arguments function properly (@test-value_change.R#54) ────
     'origin' must be supplied
     Backtrace:
     1. testthat::expect_equal(...)
     4. constellation::value_change(...)
     5. data.table::foverlaps(data, prior_data)
     8. data.table:::`[.data.table`(y, , eval(call))
     9. [ base::eval(...) ] with 1 more call
     12. base::c.POSIXct(...)
     15. base::lapply(list(...), function(e) unclass(as.POSIXct(e)))
     16. base:::FUN(X[[i]], ...)
     18. base::as.POSIXct.numeric(e)
    
     ══ testthat results ═══════════════════════════════════════════════════════════
     [ OK: 94 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 7 ]
     1. Error: bundle produces expected values for test patient (@test-bundle.R#43)
     2. Error: bundle names assign properly (@test-bundle.R#130)
     3. Error: event name assigns properly (@test-bundle.R#162)
     4. Error: window hours roll over (@test-bundle.R#173)
     5. Error: default arguments function properly (@test-bundle.R#209)
     6. Error: value change produces expected values for test patient (@test-value_change.R#25)
     7. Error: default arguments function properly (@test-value_change.R#54)
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc

Version: 0.2.0
Check: tests
Result: ERROR
     Running 'testthat.R' [5s]
    Running the tests in 'tests/testthat.R' failed.
    Complete output:
     > library(testthat)
     > library(constellation)
     >
     > test_check("constellation")
     -- 1. Error: bundle produces expected values for test patient (@test-bundle.R#43
     'origin' must be supplied
     Backtrace:
     1. testthat::expect_equal(...)
     5. constellation::bundle(...)
     6. data.table::foverlaps(...)
     9. data.table:::`[.data.table`(y, , eval(call))
     10. [ base::eval(...) ] with 1 more call
     13. base::c.POSIXct(...)
     16. base::lapply(list(...), function(e) unclass(as.POSIXct(e)))
     17. base:::FUN(X[[i]], ...)
     19. base::as.POSIXct.numeric(e)
    
     -- 2. Error: bundle names assign properly (@test-bundle.R#130) ----------------
     'origin' must be supplied
     Backtrace:
     1. testthat::expect_equal(...)
     5. constellation::bundle(...)
     6. data.table::foverlaps(...)
     9. data.table:::`[.data.table`(y, , eval(call))
     10. [ base::eval(...) ] with 1 more call
     13. base::c.POSIXct(...)
     16. base::lapply(list(...), function(e) unclass(as.POSIXct(e)))
     17. base:::FUN(X[[i]], ...)
     19. base::as.POSIXct.numeric(e)
    
     -- 3. Error: event name assigns properly (@test-bundle.R#162) -----------------
     'origin' must be supplied
     Backtrace:
     1. testthat::expect_equal(...)
     5. constellation::bundle(...)
     6. data.table::foverlaps(...)
     9. data.table:::`[.data.table`(y, , eval(call))
     10. [ base::eval(...) ] with 1 more call
     13. base::c.POSIXct(...)
     16. base::lapply(list(...), function(e) unclass(as.POSIXct(e)))
     17. base:::FUN(X[[i]], ...)
     19. base::as.POSIXct.numeric(e)
    
     -- 4. Error: window hours roll over (@test-bundle.R#173) ----------------------
     'origin' must be supplied
     Backtrace:
     1. testthat::expect_equal(...)
     4. constellation::bundle(...)
     5. data.table::foverlaps(...)
     8. data.table:::`[.data.table`(y, , eval(call))
     9. [ base::eval(...) ] with 1 more call
     12. base::c.POSIXct(...)
     15. base::lapply(list(...), function(e) unclass(as.POSIXct(e)))
     16. base:::FUN(X[[i]], ...)
     18. base::as.POSIXct.numeric(e)
    
     -- 5. Error: default arguments function properly (@test-bundle.R#209) ---------
     'origin' must be supplied
     Backtrace:
     1. testthat::expect_equal(...)
     4. constellation::bundle(...)
     5. data.table::foverlaps(...)
     8. data.table:::`[.data.table`(y, , eval(call))
     9. [ base::eval(...) ] with 1 more call
     12. base::c.POSIXct(...)
     15. base::lapply(list(...), function(e) unclass(as.POSIXct(e)))
     16. base:::FUN(X[[i]], ...)
     18. base::as.POSIXct.numeric(e)
    
     -- 6. Error: value change produces expected values for test patient (@test-value
     'origin' must be supplied
     Backtrace:
     1. testthat::expect_equal(...)
     4. constellation::value_change(...)
     5. data.table::foverlaps(data, prior_data)
     8. data.table:::`[.data.table`(y, , eval(call))
     9. [ base::eval(...) ] with 1 more call
     12. base::c.POSIXct(...)
     15. base::lapply(list(...), function(e) unclass(as.POSIXct(e)))
     16. base:::FUN(X[[i]], ...)
     18. base::as.POSIXct.numeric(e)
    
     -- 7. Error: default arguments function properly (@test-value_change.R#54) ----
     'origin' must be supplied
     Backtrace:
     1. testthat::expect_equal(...)
     4. constellation::value_change(...)
     5. data.table::foverlaps(data, prior_data)
     8. data.table:::`[.data.table`(y, , eval(call))
     9. [ base::eval(...) ] with 1 more call
     12. base::c.POSIXct(...)
     15. base::lapply(list(...), function(e) unclass(as.POSIXct(e)))
     16. base:::FUN(X[[i]], ...)
     18. base::as.POSIXct.numeric(e)
    
     == testthat results ===========================================================
     [ OK: 94 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 7 ]
     1. Error: bundle produces expected values for test patient (@test-bundle.R#43)
     2. Error: bundle names assign properly (@test-bundle.R#130)
     3. Error: event name assigns properly (@test-bundle.R#162)
     4. Error: window hours roll over (@test-bundle.R#173)
     5. Error: default arguments function properly (@test-bundle.R#209)
     6. Error: value change produces expected values for test patient (@test-value_change.R#25)
     7. Error: default arguments function properly (@test-value_change.R#54)
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-devel-windows-ix86+x86_64

Version: 0.2.0
Check: tests
Result: ERROR
     Running ‘testthat.R’ [16s/15s]
    Running the tests in ‘tests/testthat.R’ failed.
    Complete output:
     > library(testthat)
     > library(constellation)
     >
     > test_check("constellation")
     ── 1. Error: bundle produces expected values for test patient (@test-bundle.R#43
     'origin' must be supplied
     Backtrace:
     1. testthat::expect_equal(...)
     5. constellation::bundle(...)
     6. data.table::foverlaps(...)
     9. data.table:::`[.data.table`(y, , eval(call))
     10. [ base::eval(...) ] with 1 more call
     13. base::c.POSIXct(...)
     16. base::lapply(list(...), function(e) unclass(as.POSIXct(e)))
     17. base:::FUN(X[[i]], ...)
     19. base::as.POSIXct.numeric(e)
    
     ── 2. Error: bundle names assign properly (@test-bundle.R#130) ────────────────
     'origin' must be supplied
     Backtrace:
     1. testthat::expect_equal(...)
     5. constellation::bundle(...)
     6. data.table::foverlaps(...)
     9. data.table:::`[.data.table`(y, , eval(call))
     10. [ base::eval(...) ] with 1 more call
     13. base::c.POSIXct(...)
     16. base::lapply(list(...), function(e) unclass(as.POSIXct(e)))
     17. base:::FUN(X[[i]], ...)
     19. base::as.POSIXct.numeric(e)
    
     ── 3. Error: event name assigns properly (@test-bundle.R#162) ─────────────────
     'origin' must be supplied
     Backtrace:
     1. testthat::expect_equal(...)
     5. constellation::bundle(...)
     6. data.table::foverlaps(...)
     9. data.table:::`[.data.table`(y, , eval(call))
     10. [ base::eval(...) ] with 1 more call
     13. base::c.POSIXct(...)
     16. base::lapply(list(...), function(e) unclass(as.POSIXct(e)))
     17. base:::FUN(X[[i]], ...)
     19. base::as.POSIXct.numeric(e)
    
     ── 4. Error: window hours roll over (@test-bundle.R#173) ──────────────────────
     'origin' must be supplied
     Backtrace:
     1. testthat::expect_equal(...)
     4. constellation::bundle(...)
     5. data.table::foverlaps(...)
     8. data.table:::`[.data.table`(y, , eval(call))
     9. [ base::eval(...) ] with 1 more call
     12. base::c.POSIXct(...)
     15. base::lapply(list(...), function(e) unclass(as.POSIXct(e)))
     16. base:::FUN(X[[i]], ...)
     18. base::as.POSIXct.numeric(e)
    
     ── 5. Error: default arguments function properly (@test-bundle.R#209) ─────────
     'origin' must be supplied
     Backtrace:
     1. testthat::expect_equal(...)
     4. constellation::bundle(...)
     5. data.table::foverlaps(...)
     8. data.table:::`[.data.table`(y, , eval(call))
     9. [ base::eval(...) ] with 1 more call
     12. base::c.POSIXct(...)
     15. base::lapply(list(...), function(e) unclass(as.POSIXct(e)))
     16. base:::FUN(X[[i]], ...)
     18. base::as.POSIXct.numeric(e)
    
     ── 6. Error: value change produces expected values for test patient (@test-value
     'origin' must be supplied
     Backtrace:
     1. testthat::expect_equal(...)
     4. constellation::value_change(...)
     5. data.table::foverlaps(data, prior_data)
     8. data.table:::`[.data.table`(y, , eval(call))
     9. [ base::eval(...) ] with 1 more call
     12. base::c.POSIXct(...)
     15. base::lapply(list(...), function(e) unclass(as.POSIXct(e)))
     16. base:::FUN(X[[i]], ...)
     18. base::as.POSIXct.numeric(e)
    
     ── 7. Error: default arguments function properly (@test-value_change.R#54) ────
     'origin' must be supplied
     Backtrace:
     1. testthat::expect_equal(...)
     4. constellation::value_change(...)
     5. data.table::foverlaps(data, prior_data)
     8. data.table:::`[.data.table`(y, , eval(call))
     9. [ base::eval(...) ] with 1 more call
     12. base::c.POSIXct(...)
     15. base::lapply(list(...), function(e) unclass(as.POSIXct(e)))
     16. base:::FUN(X[[i]], ...)
     18. base::as.POSIXct.numeric(e)
    
     ══ testthat results ═══════════════════════════════════════════════════════════
     [ OK: 94 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 7 ]
     1. Error: bundle produces expected values for test patient (@test-bundle.R#43)
     2. Error: bundle names assign properly (@test-bundle.R#130)
     3. Error: event name assigns properly (@test-bundle.R#162)
     4. Error: window hours roll over (@test-bundle.R#173)
     5. Error: default arguments function properly (@test-bundle.R#209)
     6. Error: value change produces expected values for test patient (@test-value_change.R#25)
     7. Error: default arguments function properly (@test-value_change.R#54)
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-patched-linux-x86_64

Version: 0.2.0
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
     ...
    --- re-building ‘identify_sepsis.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    Quitting from lines 70-76 (identify_sepsis.Rmd)
    Error: processing vignette 'identify_sepsis.Rmd' failed with diagnostics:
    'origin' must be supplied
    --- failed re-building ‘identify_sepsis.Rmd’
    
    SUMMARY: processing the following file failed:
     ‘identify_sepsis.Rmd’
    
    Error: Vignette re-building failed.
    Execution halted
Flavor: r-patched-solaris-x86

Version: 0.2.0
Check: tests
Result: ERROR
     Running ‘testthat.R’ [14s/12s]
    Running the tests in ‘tests/testthat.R’ failed.
    Complete output:
     > library(testthat)
     > library(constellation)
     >
     > test_check("constellation")
     ── 1. Error: bundle produces expected values for test patient (@test-bundle.R#43
     'origin' must be supplied
     Backtrace:
     1. testthat::expect_equal(...)
     5. constellation::bundle(...)
     6. data.table::foverlaps(...)
     9. data.table:::`[.data.table`(y, , eval(call))
     10. [ base::eval(...) ] with 1 more call
     13. base::c.POSIXct(...)
     16. base::lapply(list(...), function(e) unclass(as.POSIXct(e)))
     17. base:::FUN(X[[i]], ...)
     19. base::as.POSIXct.numeric(e)
    
     ── 2. Error: bundle names assign properly (@test-bundle.R#130) ────────────────
     'origin' must be supplied
     Backtrace:
     1. testthat::expect_equal(...)
     5. constellation::bundle(...)
     6. data.table::foverlaps(...)
     9. data.table:::`[.data.table`(y, , eval(call))
     10. [ base::eval(...) ] with 1 more call
     13. base::c.POSIXct(...)
     16. base::lapply(list(...), function(e) unclass(as.POSIXct(e)))
     17. base:::FUN(X[[i]], ...)
     19. base::as.POSIXct.numeric(e)
    
     ── 3. Error: event name assigns properly (@test-bundle.R#162) ─────────────────
     'origin' must be supplied
     Backtrace:
     1. testthat::expect_equal(...)
     5. constellation::bundle(...)
     6. data.table::foverlaps(...)
     9. data.table:::`[.data.table`(y, , eval(call))
     10. [ base::eval(...) ] with 1 more call
     13. base::c.POSIXct(...)
     16. base::lapply(list(...), function(e) unclass(as.POSIXct(e)))
     17. base:::FUN(X[[i]], ...)
     19. base::as.POSIXct.numeric(e)
    
     ── 4. Error: window hours roll over (@test-bundle.R#173) ──────────────────────
     'origin' must be supplied
     Backtrace:
     1. testthat::expect_equal(...)
     4. constellation::bundle(...)
     5. data.table::foverlaps(...)
     8. data.table:::`[.data.table`(y, , eval(call))
     9. [ base::eval(...) ] with 1 more call
     12. base::c.POSIXct(...)
     15. base::lapply(list(...), function(e) unclass(as.POSIXct(e)))
     16. base:::FUN(X[[i]], ...)
     18. base::as.POSIXct.numeric(e)
    
     ── 5. Error: default arguments function properly (@test-bundle.R#209) ─────────
     'origin' must be supplied
     Backtrace:
     1. testthat::expect_equal(...)
     4. constellation::bundle(...)
     5. data.table::foverlaps(...)
     8. data.table:::`[.data.table`(y, , eval(call))
     9. [ base::eval(...) ] with 1 more call
     12. base::c.POSIXct(...)
     15. base::lapply(list(...), function(e) unclass(as.POSIXct(e)))
     16. base:::FUN(X[[i]], ...)
     18. base::as.POSIXct.numeric(e)
    
     ── 6. Error: value change produces expected values for test patient (@test-value
     'origin' must be supplied
     Backtrace:
     1. testthat::expect_equal(...)
     4. constellation::value_change(...)
     5. data.table::foverlaps(data, prior_data)
     8. data.table:::`[.data.table`(y, , eval(call))
     9. [ base::eval(...) ] with 1 more call
     12. base::c.POSIXct(...)
     15. base::lapply(list(...), function(e) unclass(as.POSIXct(e)))
     16. base:::FUN(X[[i]], ...)
     18. base::as.POSIXct.numeric(e)
    
     ── 7. Error: default arguments function properly (@test-value_change.R#54) ────
     'origin' must be supplied
     Backtrace:
     1. testthat::expect_equal(...)
     4. constellation::value_change(...)
     5. data.table::foverlaps(data, prior_data)
     8. data.table:::`[.data.table`(y, , eval(call))
     9. [ base::eval(...) ] with 1 more call
     12. base::c.POSIXct(...)
     15. base::lapply(list(...), function(e) unclass(as.POSIXct(e)))
     16. base:::FUN(X[[i]], ...)
     18. base::as.POSIXct.numeric(e)
    
     ══ testthat results ═══════════════════════════════════════════════════════════
     [ OK: 94 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 7 ]
     1. Error: bundle produces expected values for test patient (@test-bundle.R#43)
     2. Error: bundle names assign properly (@test-bundle.R#130)
     3. Error: event name assigns properly (@test-bundle.R#162)
     4. Error: window hours roll over (@test-bundle.R#173)
     5. Error: default arguments function properly (@test-bundle.R#209)
     6. Error: value change produces expected values for test patient (@test-value_change.R#25)
     7. Error: default arguments function properly (@test-value_change.R#54)
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-release-linux-x86_64

Version: 0.2.0
Check: tests
Result: ERROR
     Running ‘testthat.R’ [3s/4s]
    Running the tests in ‘tests/testthat.R’ failed.
    Last 13 lines of output:
     16. base:::FUN(X[[i]], ...)
     18. base::as.POSIXct.numeric(e)
    
     ══ testthat results ═══════════════════════════════════════════════════════════
     [ OK: 94 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 7 ]
     1. Error: bundle produces expected values for test patient (@test-bundle.R#43)
     2. Error: bundle names assign properly (@test-bundle.R#130)
     3. Error: event name assigns properly (@test-bundle.R#162)
     4. Error: window hours roll over (@test-bundle.R#173)
     5. Error: default arguments function properly (@test-bundle.R#209)
     6. Error: value change produces expected values for test patient (@test-value_change.R#25)
     7. Error: default arguments function properly (@test-value_change.R#54)
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-release-osx-x86_64

Version: 0.2.0
Check: tests
Result: ERROR
     Running 'testthat.R' [4s]
    Running the tests in 'tests/testthat.R' failed.
    Complete output:
     > library(testthat)
     > library(constellation)
     >
     > test_check("constellation")
     -- 1. Error: bundle produces expected values for test patient (@test-bundle.R#43
     'origin' must be supplied
     Backtrace:
     1. testthat::expect_equal(...)
     5. constellation::bundle(...)
     6. data.table::foverlaps(...)
     9. data.table:::`[.data.table`(y, , eval(call))
     10. [ base::eval(...) ] with 1 more call
     13. base::c.POSIXct(...)
     16. base::lapply(list(...), function(e) unclass(as.POSIXct(e)))
     17. base:::FUN(X[[i]], ...)
     19. base::as.POSIXct.numeric(e)
    
     -- 2. Error: bundle names assign properly (@test-bundle.R#130) ----------------
     'origin' must be supplied
     Backtrace:
     1. testthat::expect_equal(...)
     5. constellation::bundle(...)
     6. data.table::foverlaps(...)
     9. data.table:::`[.data.table`(y, , eval(call))
     10. [ base::eval(...) ] with 1 more call
     13. base::c.POSIXct(...)
     16. base::lapply(list(...), function(e) unclass(as.POSIXct(e)))
     17. base:::FUN(X[[i]], ...)
     19. base::as.POSIXct.numeric(e)
    
     -- 3. Error: event name assigns properly (@test-bundle.R#162) -----------------
     'origin' must be supplied
     Backtrace:
     1. testthat::expect_equal(...)
     5. constellation::bundle(...)
     6. data.table::foverlaps(...)
     9. data.table:::`[.data.table`(y, , eval(call))
     10. [ base::eval(...) ] with 1 more call
     13. base::c.POSIXct(...)
     16. base::lapply(list(...), function(e) unclass(as.POSIXct(e)))
     17. base:::FUN(X[[i]], ...)
     19. base::as.POSIXct.numeric(e)
    
     -- 4. Error: window hours roll over (@test-bundle.R#173) ----------------------
     'origin' must be supplied
     Backtrace:
     1. testthat::expect_equal(...)
     4. constellation::bundle(...)
     5. data.table::foverlaps(...)
     8. data.table:::`[.data.table`(y, , eval(call))
     9. [ base::eval(...) ] with 1 more call
     12. base::c.POSIXct(...)
     15. base::lapply(list(...), function(e) unclass(as.POSIXct(e)))
     16. base:::FUN(X[[i]], ...)
     18. base::as.POSIXct.numeric(e)
    
     -- 5. Error: default arguments function properly (@test-bundle.R#209) ---------
     'origin' must be supplied
     Backtrace:
     1. testthat::expect_equal(...)
     4. constellation::bundle(...)
     5. data.table::foverlaps(...)
     8. data.table:::`[.data.table`(y, , eval(call))
     9. [ base::eval(...) ] with 1 more call
     12. base::c.POSIXct(...)
     15. base::lapply(list(...), function(e) unclass(as.POSIXct(e)))
     16. base:::FUN(X[[i]], ...)
     18. base::as.POSIXct.numeric(e)
    
     -- 6. Error: value change produces expected values for test patient (@test-value
     'origin' must be supplied
     Backtrace:
     1. testthat::expect_equal(...)
     4. constellation::value_change(...)
     5. data.table::foverlaps(data, prior_data)
     8. data.table:::`[.data.table`(y, , eval(call))
     9. [ base::eval(...) ] with 1 more call
     12. base::c.POSIXct(...)
     15. base::lapply(list(...), function(e) unclass(as.POSIXct(e)))
     16. base:::FUN(X[[i]], ...)
     18. base::as.POSIXct.numeric(e)
    
     -- 7. Error: default arguments function properly (@test-value_change.R#54) ----
     'origin' must be supplied
     Backtrace:
     1. testthat::expect_equal(...)
     4. constellation::value_change(...)
     5. data.table::foverlaps(data, prior_data)
     8. data.table:::`[.data.table`(y, , eval(call))
     9. [ base::eval(...) ] with 1 more call
     12. base::c.POSIXct(...)
     15. base::lapply(list(...), function(e) unclass(as.POSIXct(e)))
     16. base:::FUN(X[[i]], ...)
     18. base::as.POSIXct.numeric(e)
    
     == testthat results ===========================================================
     [ OK: 94 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 7 ]
     1. Error: bundle produces expected values for test patient (@test-bundle.R#43)
     2. Error: bundle names assign properly (@test-bundle.R#130)
     3. Error: event name assigns properly (@test-bundle.R#162)
     4. Error: window hours roll over (@test-bundle.R#173)
     5. Error: default arguments function properly (@test-bundle.R#209)
     6. Error: value change produces expected values for test patient (@test-value_change.R#25)
     7. Error: default arguments function properly (@test-value_change.R#54)
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-release-windows-ix86+x86_64