CRAN Package Check Results for Package data.table

Last updated on 2020-07-02 02:09:46 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.12.8 38.84 562.27 601.11 ERROR
r-devel-linux-x86_64-debian-gcc 1.12.8 31.28 693.56 724.84 ERROR
r-devel-linux-x86_64-fedora-clang 1.12.8 505.75 ERROR
r-devel-linux-x86_64-fedora-gcc 1.12.8 492.04 ERROR
r-devel-windows-ix86+x86_64 1.12.8 129.00 691.00 820.00 ERROR
r-patched-linux-x86_64 1.12.8 34.12 637.23 671.35 ERROR
r-patched-solaris-x86 1.12.8 443.30 ERROR
r-release-linux-x86_64 1.12.8 35.69 666.88 702.57 ERROR
r-release-osx-x86_64 1.12.8 ERROR
r-release-windows-ix86+x86_64 1.12.8 117.00 660.00 777.00 ERROR
r-oldrel-osx-x86_64 1.12.8 OK
r-oldrel-windows-ix86+x86_64 1.12.8 105.00 457.00 562.00 OK

Additional issues

clang-UBSAN

Check Details

Version: 1.12.8
Check: tests
Result: ERROR
     Running 'autoprint.R' [1s/1s]
     Comparing 'autoprint.Rout' to 'autoprint.Rout.save' ... OK
     Running 'froll.R' [84s/35s]
     Running 'knitr.R' [1s/1s]
     Comparing 'knitr.Rout' to 'knitr.Rout.save' ... OK
     Running 'main.R' [332s/153s]
     Running 'nafill.R' [3s/2s]
     Running 'other.R' [0s/1s]
     Running 'types.R' [1s/1s]
    Running the tests in 'tests/main.R' failed.
    Complete output:
     > require(data.table)
     Loading required package: data.table
     >
     > test.data.table() # runs the main test suite of 5,000+ tests in /inst/tests/tests.Rraw
     getDTthreads(verbose=TRUE):
     omp_get_num_procs() 32
     R_DATATABLE_NUM_PROCS_PERCENT unset (default 50)
     R_DATATABLE_NUM_THREADS unset
     omp_get_thread_limit() 3
     omp_get_max_threads() 3
     OMP_THREAD_LIMIT 3
     OMP_NUM_THREADS 3
     RestoreAfterFork true
     data.table is using 3 threads. See ?setDTthreads.
     test.data.table() running: /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/data.table/tests/tests.Rraw.bz2
     Test 1390.3 produced 1 errors but expected 0
     Expected:
     Observed: 'origin' must be supplied
     Test 1390.4 produced 1 errors but expected 0
     Expected:
     Observed: 'origin' must be supplied
     Test 1390.5 produced 1 errors but expected 0
     Expected:
     Observed: 'origin' must be supplied
     S3 method lookup found 'as.Date.IDate' on search path
     S3 method lookup found 'as.Date.IDate' on search path
    
     10 longest running tests took 70s (46% of 151s)
     ID time nTest
     1: 1438 12.343 738
     2: 1648 9.488 91
     3: 1652 9.003 91
     4: 1650 8.227 91
     5: 1644 6.253 91
     6: 1646 6.184 91
     7: 1888 5.809 9
     8: 1642 5.026 91
     9: 1848 4.631 1
     10: 1223 3.995 728
    
     Error in test.data.table() :
     3 errors out of 8152 in 00:02:32 elapsed (00:05:11 cpu) on Tue Jun 30 23:00:36 2020. [endian==little, sizeof(long double)==16, sizeof(pointer)==8, TZ=Europe/Vienna, locale='LC_CTYPE=en_US.iso885915;LC_NUMERIC=C;LC_TIME=en_US.iso885915;LC_COLLATE=C;LC_MONETARY=en_US.iso885915;LC_MESSAGES=en_US.iso885915;LC_PAPER=en_US.iso885915;LC_NAME=C;LC_ADDRESS=C;LC_TELEPHONE=C;LC_MEASUREMENT=en_US.iso885915;LC_IDENTIFICATION=C', l10n_info()='MBCS=FALSE; UTF-8=FALSE; Latin-1=FALSE', getDTthreads()='omp_get_num_procs()==32; R_DATATABLE_NUM_PROCS_PERCENT==unset (default 50); R_DATATABLE_NUM_THREADS==unset; omp_get_thread_limit()==3; omp_get_max_threads()==3; OMP_THREAD_LIMIT==3; OMP_NUM_THREADS==3; RestoreAfterFork==true; data.table is using 3 threads. See ?setDTthreads.']. Search tests/tests.Rraw.bz2 for test numbers: 1390.3, 1390.4, 1390.5.
     In addition: Warning messages:
     1: In parse(n = -1, file = file, srcfile = NULL, keep.source = FALSE) :
     invalid input found on input connection '/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/data.table/tests/tests.Rraw.bz2'
     2: In parse(n = -1, file = file, srcfile = NULL, keep.source = FALSE) :
     invalid input found on input connection '/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/data.table/tests/tests.Rraw.bz2'
     Execution halted
Flavor: r-devel-linux-x86_64-debian-clang

Version: 1.12.8
Check: tests
Result: ERROR
     Running ‘autoprint.R’ [1s/1s]
     Comparing ‘autoprint.Rout’ to ‘autoprint.Rout.save’ ... OK
     Running ‘froll.R’ [44s/69s]
     Running ‘knitr.R’ [1s/1s]
     Comparing ‘knitr.Rout’ to ‘knitr.Rout.save’ ... OK
     Running ‘main.R’ [523s/511s]
     Running ‘nafill.R’ [3s/4s]
     Running ‘other.R’ [0s/1s]
     Running ‘types.R’ [1s/1s]
    Running the tests in ‘tests/main.R’ failed.
    Complete output:
     > require(data.table)
     Loading required package: data.table
     >
     > test.data.table() # runs the main test suite of 5,000+ tests in /inst/tests/tests.Rraw
     getDTthreads(verbose=TRUE):
     omp_get_num_procs() 32
     R_DATATABLE_NUM_PROCS_PERCENT unset (default 50)
     R_DATATABLE_NUM_THREADS unset
     omp_get_thread_limit() 3
     omp_get_max_threads() 3
     OMP_THREAD_LIMIT 3
     OMP_NUM_THREADS 3
     RestoreAfterFork true
     data.table is using 3 threads. See ?setDTthreads.
     test.data.table() running: /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/data.table/tests/tests.Rraw.bz2
     Test 1390.3 produced 1 errors but expected 0
     Expected:
     Observed: 'origin' must be supplied
     Test 1390.4 produced 1 errors but expected 0
     Expected:
     Observed: 'origin' must be supplied
     Test 1390.5 produced 1 errors but expected 0
     Expected:
     Observed: 'origin' must be supplied
     Test 1985.1 produced 1 errors but expected 0
     Expected:
     Observed: 'origin' must be supplied
     Test 1993.1 produced 1 errors but expected 0
     Expected:
     Observed: 'origin' must be supplied
    
     10 longest running tests took 233s (45% of 509s)
     ID time nTest
     1: 1650 40.254 91
     2: 1438 34.691 738
     3: 1652 27.368 91
     4: 1648 24.925 91
     5: 1644 24.873 91
     6: 1646 18.773 91
     7: 1912 18.412 2
     8: 1642 15.579 91
     9: 1252 14.592 484
     10: 1639 13.854 143
    
     Error in test.data.table() :
     5 errors out of 9662 in 00:08:30 elapsed (00:08:38 cpu) on Wed Jul 1 20:47:17 2020. [endian==little, sizeof(long double)==16, sizeof(pointer)==8, TZ=Europe/Vienna, locale='LC_CTYPE=en_US.UTF-8;LC_NUMERIC=C;LC_TIME=en_US.UTF-8;LC_COLLATE=C;LC_MONETARY=en_US.UTF-8;LC_MESSAGES=en_US.UTF-8;LC_PAPER=en_US.UTF-8;LC_NAME=C;LC_ADDRESS=C;LC_TELEPHONE=C;LC_MEASUREMENT=en_US.UTF-8;LC_IDENTIFICATION=C', l10n_info()='MBCS=TRUE; UTF-8=TRUE; Latin-1=FALSE', getDTthreads()='omp_get_num_procs()==32; R_DATATABLE_NUM_PROCS_PERCENT==unset (default 50); R_DATATABLE_NUM_THREADS==unset; omp_get_thread_limit()==3; omp_get_max_threads()==3; OMP_THREAD_LIMIT==3; OMP_NUM_THREADS==3; RestoreAfterFork==true; data.table is using 3 threads. See ?setDTthreads.']. Search tests/tests.Rraw.bz2 for test numbers: 1390.3, 1390.4, 1390.5, 1985.1, 1993.1.
     Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc

Version: 1.12.8
Check: tests
Result: ERROR
     Running ‘autoprint.R’
     Comparing ‘autoprint.Rout’ to ‘autoprint.Rout.save’ ... OK
     Running ‘froll.R’ [60s/39s]
     Running ‘knitr.R’
     Comparing ‘knitr.Rout’ to ‘knitr.Rout.save’ ... OK
     Running ‘main.R’ [236s/157s]
     Running ‘nafill.R’
     Running ‘other.R’
     Running ‘types.R’
    Running the tests in ‘tests/main.R’ failed.
    Complete output:
     > require(data.table)
     Loading required package: data.table
     >
     > test.data.table() # runs the main test suite of 5,000+ tests in /inst/tests/tests.Rraw
     getDTthreads(verbose=TRUE):
     omp_get_num_procs() 24
     R_DATATABLE_NUM_PROCS_PERCENT unset (default 50)
     R_DATATABLE_NUM_THREADS unset
     omp_get_thread_limit() 2
     omp_get_max_threads() 24
     OMP_THREAD_LIMIT 2
     OMP_NUM_THREADS unset
     RestoreAfterFork true
     data.table is using 2 threads. See ?setDTthreads.
     test.data.table() running: /data/gannet/ripley/R/packages/tests-clang/data.table.Rcheck/data.table/tests/tests.Rraw.bz2
     Test 1390.3 produced 1 errors but expected 0
     Expected:
     Observed: 'origin' must be supplied
     Test 1390.4 produced 1 errors but expected 0
     Expected:
     Observed: 'origin' must be supplied
     Test 1390.5 produced 1 errors but expected 0
     Expected:
     Observed: 'origin' must be supplied
     Test 1985.1 produced 1 errors but expected 0
     Expected:
     Observed: 'origin' must be supplied
     Test 1993.1 produced 1 errors but expected 0
     Expected:
     Observed: 'origin' must be supplied
    
     10 longest running tests took 66s (42% of 155s)
     ID time nTest
     1: 1438 11.244 738
     2: 1648 9.278 91
     3: 1652 7.739 91
     4: 1650 6.791 91
     5: 1888 5.714 9
     6: 1644 5.676 91
     7: 1848 5.305 1
     8: 1912 5.003 2
     9: 1646 4.846 91
     10: 1642 4.645 91
    
     Error in test.data.table() :
     5 errors out of 9662 in 00:02:36 elapsed (00:03:44 cpu) on Sat Jun 27 11:27:00 2020. [endian==little, sizeof(long double)==16, sizeof(pointer)==8, TZ=Europe/London, locale='LC_CTYPE=en_GB.utf8;LC_NUMERIC=C;LC_TIME=en_GB.UTF-8;LC_COLLATE=C;LC_MONETARY=en_GB.UTF-8;LC_MESSAGES=en_GB.UTF-8;LC_PAPER=en_GB.UTF-8;LC_NAME=C;LC_ADDRESS=C;LC_TELEPHONE=C;LC_MEASUREMENT=en_GB.UTF-8;LC_IDENTIFICATION=C', l10n_info()='MBCS=TRUE; UTF-8=TRUE; Latin-1=FALSE', getDTthreads()='omp_get_num_procs()==24; R_DATATABLE_NUM_PROCS_PERCENT==unset (default 50); R_DATATABLE_NUM_THREADS==unset; omp_get_thread_limit()==2; omp_get_max_threads()==24; OMP_THREAD_LIMIT==2; OMP_NUM_THREADS==unset; RestoreAfterFork==true; data.table is using 2 threads. See ?setDTthreads.']. Search tests/tests.Rraw.bz2 for test numbers: 1390.3, 1390.4, 1390.5, 1985.1, 1993.1.
     Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang

Version: 1.12.8
Check: tests
Result: ERROR
     Running ‘autoprint.R’
     Comparing ‘autoprint.Rout’ to ‘autoprint.Rout.save’ ... OK
     Running ‘froll.R’ [41s/53s]
     Running ‘knitr.R’
     Comparing ‘knitr.Rout’ to ‘knitr.Rout.save’ ... OK
     Running ‘main.R’ [245s/247s]
     Running ‘nafill.R’
     Running ‘other.R’
     Running ‘types.R’
    Running the tests in ‘tests/main.R’ failed.
    Complete output:
     > require(data.table)
     Loading required package: data.table
     >
     > test.data.table() # runs the main test suite of 5,000+ tests in /inst/tests/tests.Rraw
     getDTthreads(verbose=TRUE):
     omp_get_num_procs() 24
     R_DATATABLE_NUM_PROCS_PERCENT unset (default 50)
     R_DATATABLE_NUM_THREADS unset
     omp_get_thread_limit() 2
     omp_get_max_threads() 24
     OMP_THREAD_LIMIT 2
     OMP_NUM_THREADS unset
     RestoreAfterFork true
     data.table is using 2 threads. See ?setDTthreads.
     test.data.table() running: /data/gannet/ripley/R/packages/tests-devel/data.table.Rcheck/data.table/tests/tests.Rraw.bz2
     Test 1390.3 produced 1 errors but expected 0
     Expected:
     Observed: 'origin' must be supplied
     Test 1390.4 produced 1 errors but expected 0
     Expected:
     Observed: 'origin' must be supplied
     Test 1390.5 produced 1 errors but expected 0
     Expected:
     Observed: 'origin' must be supplied
     Test 1985.1 produced 1 errors but expected 0
     Expected:
     Observed: 'origin' must be supplied
     Test 1993.1 produced 1 errors but expected 0
     Expected:
     Observed: 'origin' must be supplied
    
     10 longest running tests took 109s (44% of 246s)
     ID time nTest
     1: 1438 19.209 738
     2: 1652 14.235 91
     3: 1648 14.143 91
     4: 1650 13.329 91
     5: 1912 9.355 2
     6: 1642 8.779 91
     7: 1644 8.594 91
     8: 1646 8.281 91
     9: 1223 7.716 728
     10: 1888 6.195 9
    
     Error in test.data.table() :
     5 errors out of 9662 in 00:04:06 elapsed (00:04:00 cpu) on Sun Jun 28 12:40:09 2020. [endian==little, sizeof(long double)==16, sizeof(pointer)==8, TZ=Europe/London, locale='LC_CTYPE=en_GB.utf8;LC_NUMERIC=C;LC_TIME=en_GB.UTF-8;LC_COLLATE=C;LC_MONETARY=en_GB.UTF-8;LC_MESSAGES=en_GB.UTF-8;LC_PAPER=en_GB.UTF-8;LC_NAME=C;LC_ADDRESS=C;LC_TELEPHONE=C;LC_MEASUREMENT=en_GB.UTF-8;LC_IDENTIFICATION=C', l10n_info()='MBCS=TRUE; UTF-8=TRUE; Latin-1=FALSE', getDTthreads()='omp_get_num_procs()==24; R_DATATABLE_NUM_PROCS_PERCENT==unset (default 50); R_DATATABLE_NUM_THREADS==unset; omp_get_thread_limit()==2; omp_get_max_threads()==24; OMP_THREAD_LIMIT==2; OMP_NUM_THREADS==unset; RestoreAfterFork==true; data.table is using 2 threads. See ?setDTthreads.']. Search tests/tests.Rraw.bz2 for test numbers: 1390.3, 1390.4, 1390.5, 1985.1, 1993.1.
     Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc

Version: 1.12.8
Check: running tests for arch ‘i386’
Result: ERROR
     Running 'autoprint.R' [1s]
     Comparing 'autoprint.Rout' to 'autoprint.Rout.save' ... OK
     Running 'froll.R' [19s]
     Running 'knitr.R' [1s]
     Comparing 'knitr.Rout' to 'knitr.Rout.save' ... OK
     Running 'main.R' [207s]
     Running 'nafill.R' [2s]
     Running 'other.R' [0s]
     Running 'types.R' [1s]
    Running the tests in 'tests/main.R' failed.
    Complete output:
     > require(data.table)
     Loading required package: data.table
     >
     > test.data.table() # runs the main test suite of 5,000+ tests in /inst/tests/tests.Rraw
     getDTthreads(verbose=TRUE):
     omp_get_num_procs() 32
     R_DATATABLE_NUM_PROCS_PERCENT unset (default 50)
     R_DATATABLE_NUM_THREADS unset
     omp_get_thread_limit() 2
     omp_get_max_threads() 32
     OMP_THREAD_LIMIT 2
     OMP_NUM_THREADS unset
     RestoreAfterFork true
     data.table is using 2 threads. See ?setDTthreads.
     test.data.table() running: D:/temp/RtmpmaNFnI/RLIBS_169405b21e36/data.table/tests/tests.Rraw.bz2
     Test 1390.3 produced 1 errors but expected 0
     Expected:
     Observed: 'origin' must be supplied
     Test 1390.4 produced 1 errors but expected 0
     Expected:
     Observed: 'origin' must be supplied
     Test 1390.5 produced 1 errors but expected 0
     Expected:
     Observed: 'origin' must be supplied
     Test 1590.04 ran without errors but failed check that x equals y:
     > x = base::order(c(x2, x1, x1, x2))
     First 4 of 4 (type 'integer'):
     [1] 1 2 3 4
     > y = INT(1, 4, 2, 3)
     First 4 of 4 (type 'integer'):
     [1] 1 4 2 3
     Mean relative difference: 0.4444444
     Test 1590.07 ran without errors but failed check that x equals y:
     > x = base::order(c(x2, x1, x1, x2))
     First 4 of 4 (type 'integer'):
     [1] 1 4 2 3
     > y = INT(2, 3, 1, 4)
     First 4 of 4 (type 'integer'):
     [1] 2 3 1 4
     Mean relative difference: 0.4
     Test 1985.1 produced 1 errors but expected 0
     Expected:
     Observed: 'origin' must be supplied
     Test 1993.1 produced 1 errors but expected 0
     Expected:
     Observed: 'origin' must be supplied
    
     10 longest running tests took 72s (35% of 206s)
     ID time nTest
     1: 1909 8.68 6
     2: 2028 8.03 2
     3: 1555 7.94 13
     4: 1869 7.91 7
     5: 900 7.64 2
     6: 1621 7.20 2
     7: 901 7.09 2
     8: 1449 7.02 2
     9: 1658 6.91 61
     10: 1037 4.38 16
    
     Error in test.data.table() :
     7 errors out of 8276 in 00:03:26 elapsed (00:01:17 cpu) on Sat Jun 27 01:13:30 2020. [endian==little, sizeof(long double)==12, sizeof(pointer)==4, TZ=Europe/Berlin, locale='LC_COLLATE=C;LC_CTYPE=German_Germany.1252;LC_MONETARY=C;LC_NUMERIC=C;LC_TIME=C', l10n_info()='MBCS=FALSE; UTF-8=FALSE; Latin-1=TRUE; codepage=1252; system.codepage=1252', getDTthreads()='omp_get_num_procs()==32; R_DATATABLE_NUM_PROCS_PERCENT==unset (default 50); R_DATATABLE_NUM_THREADS==unset; omp_get_thread_limit()==2; omp_get_max_threads()==32; OMP_THREAD_LIMIT==2; OMP_NUM_THREADS==unset; RestoreAfterFork==true; data.table is using 2 threads. See ?setDTthreads.']. Search tests/tests.Rraw.bz2 for test numbers: 1390.3, 1390.4, 1390.5, 1590.04, 1590.07, 1985.1, 1993.1.
     Execution halted
Flavor: r-devel-windows-ix86+x86_64

Version: 1.12.8
Check: running tests for arch ‘x64’
Result: ERROR
     Running 'autoprint.R' [0s]
     Comparing 'autoprint.Rout' to 'autoprint.Rout.save' ... OK
     Running 'froll.R' [21s]
     Running 'knitr.R' [1s]
     Comparing 'knitr.Rout' to 'knitr.Rout.save' ... OK
     Running 'main.R' [231s]
     Running 'nafill.R' [2s]
     Running 'other.R' [0s]
     Running 'types.R' [1s]
    Running the tests in 'tests/main.R' failed.
    Complete output:
     > require(data.table)
     Loading required package: data.table
     >
     > test.data.table() # runs the main test suite of 5,000+ tests in /inst/tests/tests.Rraw
     getDTthreads(verbose=TRUE):
     omp_get_num_procs() 32
     R_DATATABLE_NUM_PROCS_PERCENT unset (default 50)
     R_DATATABLE_NUM_THREADS unset
     omp_get_thread_limit() 2
     omp_get_max_threads() 32
     OMP_THREAD_LIMIT 2
     OMP_NUM_THREADS unset
     RestoreAfterFork true
     data.table is using 2 threads. See ?setDTthreads.
     test.data.table() running: D:/temp/RtmpmaNFnI/RLIBS_169405b21e36/data.table/tests/tests.Rraw.bz2
     Test 1390.3 produced 1 errors but expected 0
     Expected:
     Observed: 'origin' must be supplied
     Test 1390.4 produced 1 errors but expected 0
     Expected:
     Observed: 'origin' must be supplied
     Test 1390.5 produced 1 errors but expected 0
     Expected:
     Observed: 'origin' must be supplied
     Test 1590.04 ran without errors but failed check that x equals y:
     > x = base::order(c(x2, x1, x1, x2))
     First 4 of 4 (type 'integer'):
     [1] 1 2 3 4
     > y = INT(1, 4, 2, 3)
     First 4 of 4 (type 'integer'):
     [1] 1 4 2 3
     Mean relative difference: 0.4444444
     Test 1590.07 ran without errors but failed check that x equals y:
     > x = base::order(c(x2, x1, x1, x2))
     First 4 of 4 (type 'integer'):
     [1] 1 4 2 3
     > y = INT(2, 3, 1, 4)
     First 4 of 4 (type 'integer'):
     [1] 2 3 1 4
     Mean relative difference: 0.4
     Test 1985.1 produced 1 errors but expected 0
     Expected:
     Observed: 'origin' must be supplied
     Test 1993.1 produced 1 errors but expected 0
     Expected:
     Observed: 'origin' must be supplied
    
     10 longest running tests took 67s (29% of 230s)
     ID time nTest
     1: 900 8.30 2
     2: 901 8.25 2
     3: 1869 7.41 7
     4: 1449 6.88 2
     5: 2028 6.58 2
     6: 1555 6.57 13
     7: 1909 6.35 6
     8: 1621 5.69 2
     9: 1658 5.54 61
     10: 1438 5.44 738
    
     Error in test.data.table() :
     7 errors out of 9652 in 00:03:50 elapsed (00:01:38 cpu) on Sat Jun 27 01:17:47 2020. [endian==little, sizeof(long double)==16, sizeof(pointer)==8, TZ=Europe/Berlin, locale='LC_COLLATE=C;LC_CTYPE=German_Germany.1252;LC_MONETARY=C;LC_NUMERIC=C;LC_TIME=C', l10n_info()='MBCS=FALSE; UTF-8=FALSE; Latin-1=TRUE; codepage=1252; system.codepage=1252', getDTthreads()='omp_get_num_procs()==32; R_DATATABLE_NUM_PROCS_PERCENT==unset (default 50); R_DATATABLE_NUM_THREADS==unset; omp_get_thread_limit()==2; omp_get_max_threads()==32; OMP_THREAD_LIMIT==2; OMP_NUM_THREADS==unset; RestoreAfterFork==true; data.table is using 2 threads. See ?setDTthreads.']. Search tests/tests.Rraw.bz2 for test numbers: 1390.3, 1390.4, 1390.5, 1590.04, 1590.07, 1985.1, 1993.1.
     Execution halted
Flavor: r-devel-windows-ix86+x86_64

Version: 1.12.8
Check: tests
Result: ERROR
     Running ‘autoprint.R’ [1s/1s]
     Comparing ‘autoprint.Rout’ to ‘autoprint.Rout.save’ ... OK
     Running ‘froll.R’ [52s/64s]
     Running ‘knitr.R’ [1s/1s]
     Comparing ‘knitr.Rout’ to ‘knitr.Rout.save’ ... OK
     Running ‘main.R’ [449s/369s]
     Running ‘nafill.R’ [2s/2s]
     Running ‘other.R’ [0s/1s]
     Running ‘types.R’ [1s/1s]
    Running the tests in ‘tests/main.R’ failed.
    Complete output:
     > require(data.table)
     Loading required package: data.table
     >
     > test.data.table() # runs the main test suite of 5,000+ tests in /inst/tests/tests.Rraw
     getDTthreads(verbose=TRUE):
     omp_get_num_procs() 32
     R_DATATABLE_NUM_PROCS_PERCENT unset (default 50)
     R_DATATABLE_NUM_THREADS unset
     omp_get_thread_limit() 3
     omp_get_max_threads() 3
     OMP_THREAD_LIMIT 3
     OMP_NUM_THREADS 3
     RestoreAfterFork true
     data.table is using 3 threads. See ?setDTthreads.
     test.data.table() running: /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/data.table/tests/tests.Rraw.bz2
     Test 1390.3 produced 1 errors but expected 0
     Expected:
     Observed: 'origin' must be supplied
     Test 1390.4 produced 1 errors but expected 0
     Expected:
     Observed: 'origin' must be supplied
     Test 1390.5 produced 1 errors but expected 0
     Expected:
     Observed: 'origin' must be supplied
     Test 1985.1 produced 1 errors but expected 0
     Expected:
     Observed: 'origin' must be supplied
     Test 1993.1 produced 1 errors but expected 0
     Expected:
     Observed: 'origin' must be supplied
    
     10 longest running tests took 181s (49% of 367s)
     ID time nTest
     1: 1438 34.854 738
     2: 1650 27.621 91
     3: 1652 20.963 91
     4: 1646 20.575 91
     5: 1648 17.279 91
     6: 1642 15.949 91
     7: 1912 12.962 2
     8: 1223 11.359 728
     9: 1639 10.188 143
     10: 1644 9.840 91
    
     Error in test.data.table() :
     5 errors out of 9662 in 00:06:08 elapsed (00:07:21 cpu) on Wed Jul 1 14:44:34 2020. [endian==little, sizeof(long double)==16, sizeof(pointer)==8, TZ=Europe/Vienna, locale='LC_CTYPE=en_US.UTF-8;LC_NUMERIC=C;LC_TIME=en_US.UTF-8;LC_COLLATE=C;LC_MONETARY=en_US.UTF-8;LC_MESSAGES=en_US.UTF-8;LC_PAPER=en_US.UTF-8;LC_NAME=C;LC_ADDRESS=C;LC_TELEPHONE=C;LC_MEASUREMENT=en_US.UTF-8;LC_IDENTIFICATION=C', l10n_info()='MBCS=TRUE; UTF-8=TRUE; Latin-1=FALSE', getDTthreads()='omp_get_num_procs()==32; R_DATATABLE_NUM_PROCS_PERCENT==unset (default 50); R_DATATABLE_NUM_THREADS==unset; omp_get_thread_limit()==3; omp_get_max_threads()==3; OMP_THREAD_LIMIT==3; OMP_NUM_THREADS==3; RestoreAfterFork==true; data.table is using 3 threads. See ?setDTthreads.']. Search tests/tests.Rraw.bz2 for test numbers: 1390.3, 1390.4, 1390.5, 1985.1, 1993.1.
     Execution halted
Flavor: r-patched-linux-x86_64

Version: 1.12.8
Check: tests
Result: ERROR
     Running ‘autoprint.R’
     Comparing ‘autoprint.Rout’ to ‘autoprint.Rout.save’ ... OK
     Running ‘froll.R’ [38s/48s]
     Running ‘knitr.R’
     Comparing ‘knitr.Rout’ to ‘knitr.Rout.save’ ... OK
     Running ‘main.R’ [60s/73s]
     Running ‘nafill.R’
     Running ‘other.R’
     Running ‘types.R’
    Running the tests in ‘tests/main.R’ failed.
    Complete output:
     > require(data.table)
     Loading required package: data.table
     >
     > test.data.table() # runs the main test suite of 5,000+ tests in /inst/tests/tests.Rraw
     getDTthreads(verbose=TRUE):
     omp_get_num_procs() 16
     R_DATATABLE_NUM_PROCS_PERCENT unset (default 50)
     R_DATATABLE_NUM_THREADS unset
     omp_get_thread_limit() 2
     omp_get_max_threads() 2
     OMP_THREAD_LIMIT 2
     OMP_NUM_THREADS unset
     RestoreAfterFork true
     data.table is using 2 threads. See ?setDTthreads.
     test.data.table() running: /home/ripley/R/Lib32/data.table/tests/tests.Rraw.bz2
     Test 1390.3 produced 1 errors but expected 0
     Expected:
     Observed: 'origin' must be supplied
     Test 1390.4 produced 1 errors but expected 0
     Expected:
     Observed: 'origin' must be supplied
     Test 1390.5 produced 1 errors but expected 0
     Expected:
     Observed: 'origin' must be supplied
     Test 1658.421 produced 1 errors but expected 0
     Expected:
     Observed: zlib 1.2.11 (zlib.h 1.2.11) deflate() returned error -2 with z_stream->msg=="" Z_FINISH=4 Z_BLOCK=5. Please include the full output above and below this message in your data.table bug report.
     Output captured before unexpected warning/error/message:
     omp_get_num_procs() 16
     R_DATATABLE_NUM_PROCS_PERCENT unset (default 50)
     R_DATATABLE_NUM_THREADS unset
     omp_get_thread_limit() 2
     omp_get_max_threads() 2
     OMP_THREAD_LIMIT 2
     OMP_NUM_THREADS unset
     RestoreAfterFork true
     data.table is using 2 threads. See ?setDTthreads.
     No list columns are present. Setting sep2='' otherwise quote='auto' would quote fields containing sep2.
     Column writers: 3 3
     args.doRowNames=0 args.rowNames=0 doQuote=-128 args.nrow=200 args.ncol=2 eolLen=1
     maxLineLen=51. Found in 0.000s
     Writing bom (false), yaml (0 characters) and column names (true) ... deflate input stream: d8bf760 39 baa3a18 4
     deflate returned 1 with stream->total_out==24; Z_FINISH==4, Z_OK==0, Z_STREAM_END==1
     done in 0.000s
     Writing 200 rows in 1 batches of 200 rows (each buffer size 8MB, showProgress=0, nth=1)
     deflate input stream: f7e21d0 8391193 efe21c8 800
     deflate returned -2 with stream->total_out==0; Z_FINISH==4, Z_OK==0, Z_STREAM_END==1
     <simpleError in fwrite(DT, file = f1 <- tempfile(fileext = ".gz"), verbose = TRUE): zlib 1.2.11 (zlib.h 1.2.11) deflate() returned error -2 with z_stream->msg=="" Z_FINISH=4 Z_BLOCK=5. Please include the full output above and below this message in your data.table bug report.>
     Test 1658.43 ran without errors but failed check that x equals y:
     > x = fread(f1)
     Empty data.table (0 rows and 2 cols): a,b
     [Key= Types=log,log Classes=log,log]
     > y = DT
     a b [Key= Types=int,int Classes=int,int]
     1: 1 1
     2: 1 1
     ---
     199: 2 4
     200: 2 4
     Different number of rows
     Error in fwrite(DT, file = f3 <- tempfile(), compress = "gzip") :
     zlib 1.2.11 (zlib.h 1.2.11) deflate() returned error -2 with z_stream->msg=="" Z_FINISH=4 Z_BLOCK=5. Please retry fwrite() with verbose=TRUE and include the full output with your data.table bug report.
     Error in test.data.table() :
     Failed after test 1658.43 before the next test() call in /home/ripley/R/Lib32/data.table/tests/tests.Rraw.bz2
     Execution halted
Flavor: r-patched-solaris-x86

Version: 1.12.8
Check: tests
Result: ERROR
     Running ‘autoprint.R’ [1s/1s]
     Comparing ‘autoprint.Rout’ to ‘autoprint.Rout.save’ ... OK
     Running ‘froll.R’ [53s/59s]
     Running ‘knitr.R’ [1s/1s]
     Comparing ‘knitr.Rout’ to ‘knitr.Rout.save’ ... OK
     Running ‘main.R’ [480s/382s]
     Running ‘nafill.R’ [2s/2s]
     Running ‘other.R’ [0s/1s]
     Running ‘types.R’ [1s/1s]
    Running the tests in ‘tests/main.R’ failed.
    Complete output:
     > require(data.table)
     Loading required package: data.table
     >
     > test.data.table() # runs the main test suite of 5,000+ tests in /inst/tests/tests.Rraw
     getDTthreads(verbose=TRUE):
     omp_get_num_procs() 32
     R_DATATABLE_NUM_PROCS_PERCENT unset (default 50)
     R_DATATABLE_NUM_THREADS unset
     omp_get_thread_limit() 3
     omp_get_max_threads() 3
     OMP_THREAD_LIMIT 3
     OMP_NUM_THREADS 3
     RestoreAfterFork true
     data.table is using 3 threads. See ?setDTthreads.
     test.data.table() running: /home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/data.table/tests/tests.Rraw.bz2
     Test 1390.3 produced 1 errors but expected 0
     Expected:
     Observed: 'origin' must be supplied
     Test 1390.4 produced 1 errors but expected 0
     Expected:
     Observed: 'origin' must be supplied
     Test 1390.5 produced 1 errors but expected 0
     Expected:
     Observed: 'origin' must be supplied
     Test 1985.1 produced 1 errors but expected 0
     Expected:
     Observed: 'origin' must be supplied
     Test 1993.1 produced 1 errors but expected 0
     Expected:
     Observed: 'origin' must be supplied
    
     10 longest running tests took 195s (51% of 381s)
     ID time nTest
     1: 1438 39.200 738
     2: 1648 26.278 91
     3: 1652 25.251 91
     4: 1650 23.680 91
     5: 1646 20.801 91
     6: 1644 16.630 91
     7: 1642 14.016 91
     8: 1912 10.804 2
     9: 1223 9.672 728
     10: 1639 8.780 143
    
     Error in test.data.table() :
     5 errors out of 9662 in 00:06:21 elapsed (00:07:53 cpu) on Tue Jun 30 06:47:56 2020. [endian==little, sizeof(long double)==16, sizeof(pointer)==8, TZ=Europe/Vienna, locale='LC_CTYPE=en_US.UTF-8;LC_NUMERIC=C;LC_TIME=en_US.UTF-8;LC_COLLATE=C;LC_MONETARY=en_US.UTF-8;LC_MESSAGES=en_US.UTF-8;LC_PAPER=en_US.UTF-8;LC_NAME=C;LC_ADDRESS=C;LC_TELEPHONE=C;LC_MEASUREMENT=en_US.UTF-8;LC_IDENTIFICATION=C', l10n_info()='MBCS=TRUE; UTF-8=TRUE; Latin-1=FALSE', getDTthreads()='omp_get_num_procs()==32; R_DATATABLE_NUM_PROCS_PERCENT==unset (default 50); R_DATATABLE_NUM_THREADS==unset; omp_get_thread_limit()==3; omp_get_max_threads()==3; OMP_THREAD_LIMIT==3; OMP_NUM_THREADS==3; RestoreAfterFork==true; data.table is using 3 threads. See ?setDTthreads.']. Search tests/tests.Rraw.bz2 for test numbers: 1390.3, 1390.4, 1390.5, 1985.1, 1993.1.
     Execution halted
Flavor: r-release-linux-x86_64

Version: 1.12.8
Check: tests
Result: ERROR
     Running ‘autoprint.R’ [1s/1s]
     Comparing ‘autoprint.Rout’ to ‘autoprint.Rout.save’ ... OK
     Running ‘froll.R’ [13s/20s]
     Running ‘knitr.R’ [1s/1s]
     Comparing ‘knitr.Rout’ to ‘knitr.Rout.save’ ... OK
     Running ‘main.R’ [71s/114s]
    Running the tests in ‘tests/main.R’ failed.
    Last 13 lines of output:
     ID time nTest
     1: 1874 11.042 5
     2: 1888 7.667 9
     3: 1438 5.275 738
     4: 1875 4.294 1
     5: 1648 4.181 91
     6: 1650 4.089 91
     7: 1848 3.928 1
     8: 1652 3.828 91
     9: 1642 2.857 91
     10: 1437 2.630 36
    
     Error in test.data.table() :
     5 errors out of 9661 in 00:01:53 elapsed (51.0s cpu) on Mon May 18 02:11:51 2020. [endian==little, sizeof(long double)==16, sizeof(pointer)==8, TZ=America/New_York, locale='C/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8', l10n_info()='MBCS=TRUE; UTF-8=TRUE; Latin-1=FALSE', getDTthreads()='This installation of data.table has not been compiled with OpenMP support.; omp_get_num_procs()==1; R_DATATABLE_NUM_PROCS_PERCENT==unset (default 50); R_DATATABLE_NUM_THREADS==unset; omp_get_thread_limit()==1; omp_get_max_threads()==1; OMP_THREAD_LIMIT==unset; OMP_NUM_THREADS==unset; RestoreAfterFork==true; data.table is using 1 threads. See ?setDTthreads.']. Search tests/tests.Rraw.bz2 for test numbers: 1390.3, 1390.4, 1390.5, 1985.1, 1993.1.
     Execution halted
Flavor: r-release-osx-x86_64

Version: 1.12.8
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
    --- re-building ‘datatable-benchmarking.Rmd’ using rmarkdown
    --- finished re-building ‘datatable-benchmarking.Rmd’
    
    --- re-building ‘datatable-faq.Rmd’ using rmarkdown
    --- finished re-building ‘datatable-faq.Rmd’
    
    Warning: namespace ‘knitr’ is not available and has been replaced
    by .GlobalEnv when processing object ‘<unknown>’
    Error in loadVignetteBuilder(pkgdir) : vignette builder 'knitr' not found
    Calls: <Anonymous> -> loadVignetteBuilder
    Execution halted
    Warning: namespace ‘knitr’ is not available and has been replaced
    by .GlobalEnv when processing object ‘<unknown>’
    Error in loadVignetteBuilder(pkgdir) : vignette builder 'knitr' not found
    Calls: <Anonymous> -> loadVignetteBuilder
    Execution halted
    Warning: namespace ‘knitr’ is not available and has been replaced
    by .GlobalEnv when processing object ‘<unknown>’
    Error in loadVignetteBuilder(pkgdir) : vignette builder 'knitr' not found
    Calls: <Anonymous> -> loadVignetteBuilder
    Execution halted
    --- re-building ‘datatable-reference-semantics.Rmd’ using rmarkdown
    Loading required package: data.table
    --- finished re-building ‘datatable-reference-semantics.Rmd’
    
    --- re-building ‘datatable-reshape.Rmd’ using rmarkdown
    Loading required package: data.table
    --- finished re-building ‘datatable-reshape.Rmd’
    
    --- re-building ‘datatable-sd-usage.Rmd’ using rmarkdown
    Loading required package: data.table
    --- finished re-building ‘datatable-sd-usage.Rmd’
    
    --- re-building ‘datatable-secondary-indices-and-auto-indexing.Rmd’ using rmarkdown
    Loading required package: data.table
    --- finished re-building ‘datatable-secondary-indices-and-auto-indexing.Rmd’
    
    rm -rf *.tex *.bbl *.blg *.aux *.out *.toc *.log *.spl *tikzDictionary *.md figure/
    rm -rf *.tex *.bbl *.blg *.aux *.out *.toc *.log *.spl *tikzDictionary *.md figure/
    SUMMARY: processing the following files failed:
     ‘datatable-importing.Rmd’ ‘datatable-intro.Rmd’
     ‘datatable-keys-fast-subset.Rmd’
    
    Error: Vignette re-building failed.
    Execution halted
Flavor: r-release-osx-x86_64

Version: 1.12.8
Check: running tests for arch ‘i386’
Result: ERROR
     Running 'autoprint.R' [0s]
     Comparing 'autoprint.Rout' to 'autoprint.Rout.save' ... OK
     Running 'froll.R' [21s]
     Running 'knitr.R' [1s]
     Comparing 'knitr.Rout' to 'knitr.Rout.save' ... OK
     Running 'main.R' [219s]
     Running 'nafill.R' [1s]
     Running 'other.R' [0s]
     Running 'types.R' [0s]
    Running the tests in 'tests/main.R' failed.
    Complete output:
     > require(data.table)
     Loading required package: data.table
     >
     > test.data.table() # runs the main test suite of 5,000+ tests in /inst/tests/tests.Rraw
     getDTthreads(verbose=TRUE):
     omp_get_num_procs() 32
     R_DATATABLE_NUM_PROCS_PERCENT unset (default 50)
     R_DATATABLE_NUM_THREADS unset
     omp_get_thread_limit() 2
     omp_get_max_threads() 32
     OMP_THREAD_LIMIT 2
     OMP_NUM_THREADS unset
     RestoreAfterFork true
     data.table is using 2 threads. See ?setDTthreads.
     test.data.table() running: D:/temp/RtmpIPTLuf/RLIBS_2b3bc1a0c48fe/data.table/tests/tests.Rraw.bz2
     Test 1390.3 produced 1 errors but expected 0
     Expected:
     Observed: 'origin' must be supplied
     Test 1390.4 produced 1 errors but expected 0
     Expected:
     Observed: 'origin' must be supplied
     Test 1390.5 produced 1 errors but expected 0
     Expected:
     Observed: 'origin' must be supplied
     Test 1985.1 produced 1 errors but expected 0
     Expected:
     Observed: 'origin' must be supplied
     Test 1993.1 produced 1 errors but expected 0
     Expected:
     Observed: 'origin' must be supplied
    
     10 longest running tests took 79s (36% of 218s)
     ID time nTest
     1: 1449 9.29 2
     2: 900 8.95 2
     3: 1909 8.61 6
     4: 2028 8.51 2
     5: 1621 8.05 2
     6: 1555 8.02 13
     7: 1658 7.87 61
     8: 901 7.60 2
     9: 1869 7.58 7
     10: 1759 4.77 1
    
     Error in test.data.table() :
     5 errors out of 8276 in 00:03:38 elapsed (00:01:16 cpu) on Sun Jun 28 08:40:22 2020. [endian==little, sizeof(long double)==12, sizeof(pointer)==4, TZ=Europe/Berlin, locale='LC_COLLATE=C;LC_CTYPE=German_Germany.1252;LC_MONETARY=C;LC_NUMERIC=C;LC_TIME=C', l10n_info()='MBCS=FALSE; UTF-8=FALSE; Latin-1=TRUE; codepage=1252; system.codepage=1252', getDTthreads()='omp_get_num_procs()==32; R_DATATABLE_NUM_PROCS_PERCENT==unset (default 50); R_DATATABLE_NUM_THREADS==unset; omp_get_thread_limit()==2; omp_get_max_threads()==32; OMP_THREAD_LIMIT==2; OMP_NUM_THREADS==unset; RestoreAfterFork==true; data.table is using 2 threads. See ?setDTthreads.']. Search tests/tests.Rraw.bz2 for test numbers: 1390.3, 1390.4, 1390.5, 1985.1, 1993.1.
     Execution halted
Flavor: r-release-windows-ix86+x86_64

Version: 1.12.8
Check: running tests for arch ‘x64’
Result: ERROR
     Running 'autoprint.R' [1s]
     Comparing 'autoprint.Rout' to 'autoprint.Rout.save' ... OK
     Running 'froll.R' [24s]
     Running 'knitr.R' [1s]
     Comparing 'knitr.Rout' to 'knitr.Rout.save' ... OK
     Running 'main.R' [246s]
     Running 'nafill.R' [1s]
     Running 'other.R' [1s]
     Running 'types.R' [0s]
    Running the tests in 'tests/main.R' failed.
    Complete output:
     > require(data.table)
     Loading required package: data.table
     >
     > test.data.table() # runs the main test suite of 5,000+ tests in /inst/tests/tests.Rraw
     getDTthreads(verbose=TRUE):
     omp_get_num_procs() 32
     R_DATATABLE_NUM_PROCS_PERCENT unset (default 50)
     R_DATATABLE_NUM_THREADS unset
     omp_get_thread_limit() 2
     omp_get_max_threads() 32
     OMP_THREAD_LIMIT 2
     OMP_NUM_THREADS unset
     RestoreAfterFork true
     data.table is using 2 threads. See ?setDTthreads.
     test.data.table() running: D:/temp/RtmpIPTLuf/RLIBS_2b3bc1a0c48fe/data.table/tests/tests.Rraw.bz2
     Test 1390.3 produced 1 errors but expected 0
     Expected:
     Observed: 'origin' must be supplied
     Test 1390.4 produced 1 errors but expected 0
     Expected:
     Observed: 'origin' must be supplied
     Test 1390.5 produced 1 errors but expected 0
     Expected:
     Observed: 'origin' must be supplied
     Test 1985.1 produced 1 errors but expected 0
     Expected:
     Observed: 'origin' must be supplied
     Test 1993.1 produced 1 errors but expected 0
     Expected:
     Observed: 'origin' must be supplied
    
     10 longest running tests took 71s (29% of 245s)
     ID time nTest
     1: 2028 7.74 2
     2: 900 7.42 2
     3: 1869 7.41 7
     4: 1621 7.35 2
     5: 1658 7.19 61
     6: 1449 7.07 2
     7: 901 7.05 2
     8: 1555 6.97 13
     9: 1438 6.82 738
     10: 1909 6.73 6
    
     Error in test.data.table() :
     5 errors out of 9652 in 00:04:05 elapsed (00:01:41 cpu) on Sun Jun 28 08:44:57 2020. [endian==little, sizeof(long double)==16, sizeof(pointer)==8, TZ=Europe/Berlin, locale='LC_COLLATE=C;LC_CTYPE=German_Germany.1252;LC_MONETARY=C;LC_NUMERIC=C;LC_TIME=C', l10n_info()='MBCS=FALSE; UTF-8=FALSE; Latin-1=TRUE; codepage=1252; system.codepage=1252', getDTthreads()='omp_get_num_procs()==32; R_DATATABLE_NUM_PROCS_PERCENT==unset (default 50); R_DATATABLE_NUM_THREADS==unset; omp_get_thread_limit()==2; omp_get_max_threads()==32; OMP_THREAD_LIMIT==2; OMP_NUM_THREADS==unset; RestoreAfterFork==true; data.table is using 2 threads. See ?setDTthreads.']. Search tests/tests.Rraw.bz2 for test numbers: 1390.3, 1390.4, 1390.5, 1985.1, 1993.1.
     Execution halted
Flavor: r-release-windows-ix86+x86_64