CRAN Package Check Results for Package gwsem

Last updated on 2020-08-19 01:50:01 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 2.0.5 149.16 546.79 695.95 OK
r-devel-linux-x86_64-debian-gcc 2.0.5 106.56 397.25 503.81 OK
r-devel-linux-x86_64-fedora-clang 2.0.5 680.10 NOTE
r-devel-linux-x86_64-fedora-gcc 2.0.5 470.87 OK
r-devel-windows-ix86+x86_64 2.0.5 341.00 564.00 905.00 NOTE
r-patched-linux-x86_64 2.0.5 99.10 416.56 515.66 OK
r-patched-solaris-x86 2.0.5 322.40 ERROR
r-release-linux-x86_64 2.0.5 99.31 402.22 501.53 OK
r-release-macos-x86_64 2.0.5 NOTE
r-release-windows-ix86+x86_64 2.0.5 328.00 421.00 749.00 NOTE
r-oldrel-macos-x86_64 2.0.5 NOTE
r-oldrel-windows-ix86+x86_64 2.0.5 239.00 529.00 768.00 NOTE

Check Details

Version: 2.0.5
Check: installed package size
Result: NOTE
     installed size is 14.2Mb
     sub-directories of 1Mb or more:
     libs 12.5Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-windows-ix86+x86_64, r-release-macos-x86_64, r-release-windows-ix86+x86_64, r-oldrel-macos-x86_64, r-oldrel-windows-ix86+x86_64

Version: 2.0.5
Check: tests
Result: ERROR
     Running ‘testthat.R’ [16s/24s]
    Running the tests in ‘tests/testthat.R’ failed.
    Complete output:
     > library(testthat)
     > library(gwsem)
     Loading required package: OpenMx
     To take full advantage of multiple cores, use:
     mxOption(key='Number of Threads', value=parallel::detectCores()) #now
     Sys.setenv(OMP_NUM_THREADS=parallel::detectCores()) #before library(OpenMx)
     >
     > test_check("gwsem")
     Error: C stack usage 273650804 is too close to the limit
     ── 1. Error: (unknown) (@test-covariate.R#36) ─────────────────────────────────
     This model has 5 matrices, but the backend has returned 0 values
     Backtrace:
     1. gwsem::GWAS(...)
     2. OpenMx::mxRun(model)
     3. OpenMx:::runHelper(...)
     4. OpenMx:::updateModelMatrices(model, flatModel, output$matrices)
    
     Error: C stack usage 273650804 is too close to the limit
     ── 2. Error: (unknown) (@test-formats.R#24) ───────────────────────────────────
     This model has 4 matrices, but the backend has returned 0 values
     Backtrace:
     1. gwsem::GWAS(...)
     2. OpenMx::mxRun(model)
     3. OpenMx:::runHelper(...)
     4. OpenMx:::updateModelMatrices(model, flatModel, output$matrices)
    
     Error: C stack usage 273650804 is too close to the limit
     ── 3. Error: gxe data roundtrip (@test-gxe.R#36) ──────────────────────────────
     This model has 7 matrices, but the backend has returned 0 values
     Backtrace:
     1. gwsem::GWAS(...)
     2. OpenMx::mxRun(model)
     3. OpenMx:::runHelper(...)
     4. OpenMx:::updateModelMatrices(model, flatModel, output$matrices)
    
     ── 4. Error: (unknown) (@test-model.R#75) ─────────────────────────────────────
     incompatible dimensions
     Backtrace:
     1. testthat::expect_equal(cor(ml$P, pgen$P), 1, tolerance = 0.001)
     4. stats::cor(ml$P, pgen$P)
    
     ══ testthat results ═══════════════════════════════════════════════════════════
     [ OK: 16 | SKIPPED: 0 | WARNINGS: 3 | FAILED: 4 ]
     1. Error: (unknown) (@test-covariate.R#36)
     2. Error: (unknown) (@test-formats.R#24)
     3. Error: gxe data roundtrip (@test-gxe.R#36)
     4. Error: (unknown) (@test-model.R#75)
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-patched-solaris-x86