brainGraph: Graph Theory Analysis of Brain MRI Data

A set of tools for performing graph theory analysis of brain MRI data. It works with data from a Freesurfer analysis (cortical thickness, volumes, local gyrification index, surface area), diffusion tensor tractography data (e.g., from FSL) and resting-state fMRI data (e.g., from DPABI). It contains a graphical user interface for graph visualization and data exploration, along with several functions for generating useful figures.

Version: 2.7.3
Depends: R (≥ 3.0.0), igraph (≥ 1.0.0)
Imports: abind, ade4, boot, data.table, expm, foreach, ggplot2, ggrepel, gridExtra, Hmisc, MASS, Matrix, methods, oro.nifti, permute, parallel, RcppEigen, scales
Suggests: RGtk2, cairoDevice, mediation
Published: 2019-11-07
Author: Christopher G. Watson ORCID iD [aut, cre]
Maintainer: Christopher G. Watson <cgwatson at>
License: GPL-3
NeedsCompilation: no
Materials: NEWS
CRAN checks: brainGraph results


Reference manual: brainGraph.pdf
Package source: brainGraph_2.7.3.tar.gz
Windows binaries: r-devel:, r-release:, r-oldrel:
macOS binaries: r-release: brainGraph_2.7.3.tgz, r-oldrel: brainGraph_2.7.3.tgz
Old sources: brainGraph archive

Reverse dependencies:

Reverse imports: netjack


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