SoupX: Single Cell mRNA Soup eXterminator

Quantify, profile and remove ambient mRNA contamination (the "soup") from droplet based single cell RNA-seq experiments. Implements the method described in Young et al. (2018) <doi:10.1101/303727>.

Version: 1.4.5
Depends: R (≥ 3.5.0)
Imports: ggplot2, Matrix, methods, Seurat
Suggests: knitr, rstan, DropletUtils, rmarkdown
Published: 2020-05-26
Author: Matthew Daniel Young
Maintainer: Matthew Daniel Young <my4 at>
License: GPL-2
NeedsCompilation: no
Citation: SoupX citation info
Materials: README
CRAN checks: SoupX results


Reference manual: SoupX.pdf
Vignettes: PBMC Demonstration
Package source: SoupX_1.4.5.tar.gz
Windows binaries: r-devel:, r-release:, r-oldrel:
macOS binaries: r-release: SoupX_1.4.5.tgz, r-oldrel: SoupX_1.4.5.tgz


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