A personalized metabolites and pathway analysis tool. With the metabolites data provided by users, lilikoi maps the metabolites data into pathways and calculates pathway deregulation scores. It enables users to perform exploratory analysis, classification and prognosis analysis on both metabolites and pathways. References: Fadhl M AlAkwaa, Breck Yunits, Sijia Huang, Hassam Alhajaji, Lana X Garmire <doi.org/10.1093/gigascience/giy136> H. Paul Benton <http://www.metabolomics-forum.com/index.php?topic=281.0> Jeff Xia <https://github.com/cangfengzhe/Metabo/blob/master/MetaboAnalyst/website/name_match.R> Travers Ching, Xun Zhu, Lana X. Garmire (2018) <doi:10.1371/journal.pcbi.1006076>.
| Version: | 2.0.2 |
| Depends: | R (≥ 3.5.0) |
| Imports: | car, caret, dplyr, gbm, ggplot2, glmnet, h2o, impute, infotheo, limma, M3C, Metrics, MLmetrics, parallel, pathifier, pathview, plyr, preprocessCore, pROC, RCy3, reticulate, reshape, RWeka, scales, stats, stringr, survminer, survival |
| Suggests: | knitr, rmarkdown |
| Published: | 2020-10-03 |
| Author: | Xinying Fang [aut], Yu Liu [aut], Zhijie Ren [aut], Fadhl Alakwaa [aut], Sijia Huang [aut], Lana Garmire [aut, cre] |
| Maintainer: | Lana Garmire <lgarmire at med.umich.edu> |
| License: | GPL-2 |
| NeedsCompilation: | no |
| Materials: | README NEWS |
| CRAN checks: | lilikoi results |
| Reference manual: | lilikoi.pdf |
| Vignettes: |
Lilikoi V2.0 |
| Package source: | lilikoi_2.0.2.tar.gz |
| Windows binaries: | r-devel: lilikoi_2.0.2.zip, r-release: lilikoi_2.0.2.zip, r-oldrel: lilikoi_2.0.2.zip |
| macOS binaries: | r-release: not available, r-oldrel: not available |
| Old sources: | lilikoi archive |
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