Construction of genetic maps in autopolyploid full-sib populations. Uses pairwise recombination fraction estimation as the first source of information to sequentially position allelic variants in specific homologs. For situations where pairwise analysis has limited power, the algorithm relies on the multilocus likelihood obtained through a hidden Markov model (HMM). For more detail, please see Mollinari and Garcia (2019) <doi:10.1534/g3.119.400378> and Mollinari et al. (2020) <doi:10.1534/g3.119.400620>.
Version: | 0.2.0 |
Depends: | R (≥ 3.5.0) |
Imports: | Rcpp (≥ 0.12.6), RCurl, plotly, fields, ggpubr, ggsci, rstudioapi, plot3D, memuse, dplyr, crayon, cli, magrittr, reshape2, ggplot2, smacof, princurve, dendextend, vcfR |
LinkingTo: | Rcpp |
Suggests: | testthat, RColorBrewer, updog, covr, polymapR |
Published: | 2020-10-10 |
Author: | Marcelo Mollinari |
Maintainer: | Marcelo Mollinari <mmollin at ncsu.edu> |
BugReports: | https://github.com/mmollina/MAPpoly/issues |
License: | GPL-3 |
URL: | https://github.com/mmollina/MAPpoly |
NeedsCompilation: | yes |
SystemRequirements: | C++11 |
Citation: | mappoly citation info |
Materials: | README |
CRAN checks: | mappoly results |
Reference manual: | mappoly.pdf |
Package source: | mappoly_0.2.0.tar.gz |
Windows binaries: | r-devel: not available, r-release: not available, r-oldrel: not available |
macOS binaries: | r-release: not available, r-oldrel: not available |
Please use the canonical form https://CRAN.R-project.org/package=mappoly to link to this page.