A novel, multi-modal simulation engine for studying dynamic cellular processes at single-cell resolution. 'dyngen' is more flexible than current single-cell simulation engines. It allows better method development and benchmarking, thereby stimulating development and testing of novel computational methods. Cannoodt et al. (2020) <doi:10.1101/2020.02.06.936971>.
Version: | 0.4.0 |
Depends: | R (≥ 3.5.0) |
Imports: | assertthat, dplyr, dynutils (≥ 1.0.4), furrr, ggplot2, ggraph (≥ 2.0), ggrepel, GillespieSSA2 (≥ 0.2.6), grDevices, grid, igraph, lmds, Matrix, methods, patchwork, pbapply, purrr, rlang (≥ 0.4.1), stats, tibble, tidygraph, tidyr, utils, viridis |
Suggests: | covr, dynwrap (≥ 1.2.0), knitr, R.rsp, rmarkdown, testthat |
Published: | 2020-09-10 |
Author: | Robrecht Cannoodt |
Maintainer: | Robrecht Cannoodt <rcannood at gmail.com> |
BugReports: | https://github.com/dynverse/dyngen/issues |
License: | MIT + file LICENSE |
URL: | https://github.com/dynverse/dyngen |
NeedsCompilation: | no |
Citation: | dyngen citation info |
Materials: | README NEWS |
CRAN checks: | dyngen results |
Reference manual: | dyngen.pdf |
Vignettes: |
Getting started showcase_backbones |
Package source: | dyngen_0.4.0.tar.gz |
Windows binaries: | r-devel: dyngen_0.4.0.zip, r-release: dyngen_0.4.0.zip, r-oldrel: dyngen_0.4.0.zip |
macOS binaries: | r-release: dyngen_0.4.0.tgz, r-oldrel: not available |
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