metacoder: Tools for Parsing, Manipulating, and Graphing Taxonomic Abundance Data

A set of tools for parsing, manipulating, and graphing data classified by a hierarchy (e.g. a taxonomy).

Version: 0.3.4
Depends: R (≥ 3.0.2), taxa
Imports: stringr, ggplot2, igraph, scales, grid, taxize, seqinr, reshape2, zoo, traits, RColorBrewer, RCurl, ape, reshape, stats, grDevices, utils, lazyeval, dplyr, magrittr, readr, rlang, biomformat, phylotate, ggfittext, vegan, ggrepel, cowplot, GA, Rcpp, crayon, svglite, viridisLite, tibble
LinkingTo: Rcpp
Suggests: knitr, rmarkdown, testthat, zlibbioc, BiocManager, phyloseq
Published: 2020-04-29
Author: Zachary Foster [aut, cre], Niklaus Grunwald [ths], Rob Gilmore [ctb]
Maintainer: Zachary Foster <zacharyfoster1989 at>
License: GPL-2 | GPL-3
NeedsCompilation: yes
Citation: metacoder citation info
Materials: README NEWS
In views: Phylogenetics
CRAN checks: metacoder results


Reference manual: metacoder.pdf
Vignettes: Documentation for metacoder
Package source: metacoder_0.3.4.tar.gz
Windows binaries: r-devel:, r-release:, r-oldrel:
macOS binaries: r-release: metacoder_0.3.4.tgz, r-oldrel: metacoder_0.3.4.tgz
Old sources: metacoder archive


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