Last updated on 2021-01-25 00:48:13 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 6.1.0 | 40.63 | 207.67 | 248.30 | OK | |
| r-devel-linux-x86_64-debian-gcc | 6.1.0 | 29.75 | 156.24 | 185.99 | OK | |
| r-devel-linux-x86_64-fedora-clang | 6.1.0 | 306.39 | NOTE | |||
| r-devel-linux-x86_64-fedora-gcc | 6.1.0 | 308.02 | NOTE | |||
| r-devel-windows-ix86+x86_64 | 6.1.0 | 86.00 | 348.00 | 434.00 | NOTE | |
| r-patched-linux-x86_64 | 6.1.0 | 33.51 | 192.19 | 225.70 | OK | |
| r-patched-solaris-x86 | 6.1.0 | 379.30 | WARN | |||
| r-release-linux-x86_64 | 6.1.0 | 35.56 | 192.12 | 227.68 | OK | |
| r-release-macos-x86_64 | 6.1.0 | WARN | ||||
| r-release-windows-ix86+x86_64 | 6.1.0 | 87.00 | 343.00 | 430.00 | NOTE | |
| r-oldrel-macos-x86_64 | 6.1.0 | ERROR | ||||
| r-oldrel-windows-ix86+x86_64 | 6.1.0 | 66.00 | 330.00 | 396.00 | ERROR |
Version: 6.1.0
Check: dependencies in R code
Result: NOTE
Namespace in Imports field not imported from: ‘magrittr’
All declared Imports should be used.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-solaris-x86, r-release-macos-x86_64, r-oldrel-macos-x86_64
Version: 6.1.0
Check: Rd cross-references
Result: NOTE
Undeclared packages ‘mvoutlier’, ‘mi’ in Rd xrefs
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 6.1.0
Check: data for non-ASCII characters
Result: NOTE
Note: found 2754 marked UTF-8 strings
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-solaris-x86, r-release-macos-x86_64, r-oldrel-macos-x86_64
Version: 6.1.0
Check: installed package size
Result: NOTE
installed size is 5.6Mb
sub-directories of 1Mb or more:
doc 2.2Mb
libs 2.1Mb
Flavors: r-devel-windows-ix86+x86_64, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64
Version: 6.1.0
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
...
--- re-building ‘VIM.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
Loading required package: colorspace
Loading required package: grid
VIM is ready to use.
Suggestions and bug-reports can be submitted at: https://github.com/statistikat/VIM/issues
Attaching package: 'VIM'
The following object is masked from 'package:datasets':
sleep
--- finished re-building ‘VIM.Rmd’
--- re-building ‘VisualImp.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
Loading required package: colorspace
Loading required package: grid
VIM is ready to use.
Suggestions and bug-reports can be submitted at: https://github.com/statistikat/VIM/issues
Attaching package: 'VIM'
The following object is masked from 'package:datasets':
sleep
--- finished re-building ‘VisualImp.Rmd’
--- re-building ‘donorImp.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
Loading required package: colorspace
Loading required package: grid
VIM is ready to use.
Suggestions and bug-reports can be submitted at: https://github.com/statistikat/VIM/issues
Attaching package: 'VIM'
The following object is masked from 'package:datasets':
sleep
Warning in cbind(TRUE1 = as.numeric(iris[as.matrix(y[which(y$col == 1), :
number of rows of result is not a multiple of vector length (arg 1)
Quitting from lines 111-148 (donorImp.Rmd)
Error: processing vignette 'donorImp.Rmd' failed with diagnostics:
there is no package called 'webshot'
--- failed re-building ‘donorImp.Rmd’
--- re-building ‘irmi.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
Loading required package: colorspace
Loading required package: grid
VIM is ready to use.
Suggestions and bug-reports can be submitted at: https://github.com/statistikat/VIM/issues
Attaching package: 'VIM'
The following object is masked from 'package:datasets':
sleep
Warning in cbind(TRUE1 = as.numeric(iris[as.matrix(y[which(y$col == 1), :
number of rows of result is not a multiple of vector length (arg 1)
Quitting from lines 108-145 (irmi.Rmd)
Error: processing vignette 'irmi.Rmd' failed with diagnostics:
there is no package called 'webshot'
--- failed re-building ‘irmi.Rmd’
--- re-building ‘modelImp.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
Loading required package: colorspace
Loading required package: grid
VIM is ready to use.
Suggestions and bug-reports can be submitted at: https://github.com/statistikat/VIM/issues
Attaching package: 'VIM'
The following object is masked from 'package:datasets':
sleep
Warning in cbind(TRUE1 = as.numeric(iris[as.matrix(y[which(y$col == 1), :
number of rows of result is not a multiple of vector length (arg 1)
Quitting from lines 128-158 (modelImp.Rmd)
Error: processing vignette 'modelImp.Rmd' failed with diagnostics:
there is no package called 'webshot'
--- failed re-building ‘modelImp.Rmd’
SUMMARY: processing the following files failed:
‘donorImp.Rmd’ ‘irmi.Rmd’ ‘modelImp.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-patched-solaris-x86
Version: 6.1.0
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
--- re-building ‘VIM.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
Loading required package: colorspace
Loading required package: grid
VIM is ready to use.
Suggestions and bug-reports can be submitted at: https://github.com/statistikat/VIM/issues
Attaching package: 'VIM'
The following object is masked from 'package:datasets':
sleep
--- finished re-building ‘VIM.Rmd’
--- re-building ‘VisualImp.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
Loading required package: colorspace
Loading required package: grid
VIM is ready to use.
Suggestions and bug-reports can be submitted at: https://github.com/statistikat/VIM/issues
Attaching package: 'VIM'
The following object is masked from 'package:datasets':
sleep
--- finished re-building ‘VisualImp.Rmd’
--- re-building ‘donorImp.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
Loading required package: colorspace
Loading required package: grid
VIM is ready to use.
Suggestions and bug-reports can be submitted at: https://github.com/statistikat/VIM/issues
Attaching package: 'VIM'
The following object is masked from 'package:datasets':
sleep
Warning in cbind(TRUE1 = as.numeric(iris[as.matrix(y[which(y$col == 1), :
number of rows of result is not a multiple of vector length (arg 1)
Warning in normalizePath(f2) :
path[1]="webshot597c5de85f03.png": No such file or directory
Warning in file(con, "rb") :
cannot open file 'webshot597c5de85f03.png': No such file or directory
Quitting from lines 111-148 (donorImp.Rmd)
Error: processing vignette 'donorImp.Rmd' failed with diagnostics:
cannot open the connection
--- failed re-building ‘donorImp.Rmd’
--- re-building ‘irmi.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
Loading required package: colorspace
Loading required package: grid
VIM is ready to use.
Suggestions and bug-reports can be submitted at: https://github.com/statistikat/VIM/issues
Attaching package: 'VIM'
The following object is masked from 'package:datasets':
sleep
Warning in cbind(TRUE1 = as.numeric(iris[as.matrix(y[which(y$col == 1), :
number of rows of result is not a multiple of vector length (arg 1)
Warning in normalizePath(f2) :
path[1]="webshot59b93bd29004.png": No such file or directory
Warning in file(con, "rb") :
cannot open file 'webshot59b93bd29004.png': No such file or directory
Quitting from lines 108-145 (irmi.Rmd)
Error: processing vignette 'irmi.Rmd' failed with diagnostics:
cannot open the connection
--- failed re-building ‘irmi.Rmd’
--- re-building ‘modelImp.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
Loading required package: colorspace
Loading required package: grid
VIM is ready to use.
Suggestions and bug-reports can be submitted at: https://github.com/statistikat/VIM/issues
Attaching package: 'VIM'
The following object is masked from 'package:datasets':
sleep
Warning in cbind(TRUE1 = as.numeric(iris[as.matrix(y[which(y$col == 1), :
number of rows of result is not a multiple of vector length (arg 1)
Warning in normalizePath(f2) :
path[1]="webshot59ca3516d571.png": No such file or directory
Warning in file(con, "rb") :
cannot open file 'webshot59ca3516d571.png': No such file or directory
Quitting from lines 128-158 (modelImp.Rmd)
Error: processing vignette 'modelImp.Rmd' failed with diagnostics:
cannot open the connection
--- failed re-building ‘modelImp.Rmd’
SUMMARY: processing the following files failed:
‘donorImp.Rmd’ ‘irmi.Rmd’ ‘modelImp.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-release-macos-x86_64
Version: 6.1.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [18s/18s]
Running the tests in ‘tests/testthat.R’ failed.
Last 13 lines of output:
`ir <- irmi(test_df, mixed = "m", count = "co")` did not produce any warnings.
── Failure (test_IRMI_ordered.R:15:3): irmi step ───────────────────────────────
`ir <- irmi(test_df, mixed = "m", count = "co", step = TRUE)` did not produce any warnings.
── Failure (test_IRMI_ordered.R:20:3): irmi step noise ─────────────────────────
`ir <- irmi(test_df, mixed = "m", count = "co", step = TRUE, noise = TRUE)` did not produce any warnings.
── Failure (test_IRMI_ordered.R:25:3): irmi robust ─────────────────────────────
`ir <- irmi(test_df, robust = TRUE, mixed = "m", count = "co")` did not produce any warnings.
── Failure (test_IRMI_ordered.R:34:3): irmi robust noise ───────────────────────
`... <- NULL` did not produce any warnings.
── Failure (test_IRMI_ordered.R:39:3): irmi robust noise with no imp_var ───────
`... <- NULL` did not produce any warnings.
[ FAIL 6 | WARN 0 | SKIP 0 | PASS 144 ]
Error: Test failures
Execution halted
Flavor: r-oldrel-macos-x86_64
Version: 6.1.0
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
--- re-building ‘VIM.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
Loading required package: colorspace
Loading required package: grid
VIM is ready to use.
Suggestions and bug-reports can be submitted at: https://github.com/statistikat/VIM/issues
Attaching package: 'VIM'
The following object is masked from 'package:datasets':
sleep
--- finished re-building ‘VIM.Rmd’
--- re-building ‘VisualImp.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
Loading required package: colorspace
Loading required package: grid
VIM is ready to use.
Suggestions and bug-reports can be submitted at: https://github.com/statistikat/VIM/issues
Attaching package: 'VIM'
The following object is masked from 'package:datasets':
sleep
--- finished re-building ‘VisualImp.Rmd’
--- re-building ‘donorImp.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
Loading required package: colorspace
Loading required package: grid
VIM is ready to use.
Suggestions and bug-reports can be submitted at: https://github.com/statistikat/VIM/issues
Attaching package: 'VIM'
The following object is masked from 'package:datasets':
sleep
Warning in cbind(TRUE1 = as.numeric(iris[as.matrix(y[which(y$col == 1), :
number of rows of result is not a multiple of vector length (arg 1)
Warning in normalizePath(f2) :
path[1]="webshot12243905fc7c.png": No such file or directory
Warning in file(con, "rb") :
cannot open file 'webshot12243905fc7c.png': No such file or directory
Quitting from lines 111-148 (donorImp.Rmd)
Error: processing vignette 'donorImp.Rmd' failed with diagnostics:
cannot open the connection
--- failed re-building ‘donorImp.Rmd’
--- re-building ‘irmi.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
Loading required package: colorspace
Loading required package: grid
VIM is ready to use.
Suggestions and bug-reports can be submitted at: https://github.com/statistikat/VIM/issues
Attaching package: 'VIM'
The following object is masked from 'package:datasets':
sleep
Warning in cbind(TRUE1 = as.numeric(iris[as.matrix(y[which(y$col == 1), :
number of rows of result is not a multiple of vector length (arg 1)
Warning in normalizePath(f2) :
path[1]="webshot1224f7ae8d40e.png": No such file or directory
Warning in file(con, "rb") :
cannot open file 'webshot1224f7ae8d40e.png': No such file or directory
Quitting from lines 108-145 (irmi.Rmd)
Error: processing vignette 'irmi.Rmd' failed with diagnostics:
cannot open the connection
--- failed re-building ‘irmi.Rmd’
--- re-building ‘modelImp.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
Loading required package: colorspace
Loading required package: grid
VIM is ready to use.
Suggestions and bug-reports can be submitted at: https://github.com/statistikat/VIM/issues
Attaching package: 'VIM'
The following object is masked from 'package:datasets':
sleep
Warning in cbind(TRUE1 = as.numeric(iris[as.matrix(y[which(y$col == 1), :
number of rows of result is not a multiple of vector length (arg 1)
Warning in normalizePath(f2) :
path[1]="webshot1225be640d20.png": No such file or directory
Warning in file(con, "rb") :
cannot open file 'webshot1225be640d20.png': No such file or directory
Quitting from lines 128-158 (modelImp.Rmd)
Error: processing vignette 'modelImp.Rmd' failed with diagnostics:
cannot open the connection
--- failed re-building ‘modelImp.Rmd’
SUMMARY: processing the following files failed:
‘donorImp.Rmd’ ‘irmi.Rmd’ ‘modelImp.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-oldrel-macos-x86_64
Version: 6.1.0
Check: running tests for arch ‘i386’
Result: ERROR
Running 'testthat.R' [26s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> library(testthat)
> library(VIM)
Loading required package: colorspace
Loading required package: grid
VIM is ready to use.
Suggestions and bug-reports can be submitted at: https://github.com/statistikat/VIM/issues
Attaching package: 'VIM'
The following object is masked from 'package:datasets':
sleep
> test_check("VIM")
Start: AIC=1370.52
y ~ v1 + v2 + m + b + c + co
Df Deviance AIC
- co 1 1350.6 1368.6
- b 1 1352.0 1370.0
- v1 1 1352.4 1370.4
<none> 1350.5 1370.5
- v2 1 1353.8 1371.8
- m 1 1355.5 1373.5
- c 4 1374.2 1386.2
Step: AIC=1368.58
y ~ v1 + v2 + m + b + c
Df Deviance AIC
- b 1 1352.0 1368.0
- v1 1 1352.5 1368.5
<none> 1350.6 1368.6
- v2 1 1353.8 1369.8
- m 1 1355.6 1371.6
- c 4 1374.2 1384.2
Step: AIC=1368.05
y ~ v1 + v2 + m + c
Df Deviance AIC
- v1 1 1353.8 1367.8
<none> 1352.0 1368.0
- v2 1 1355.4 1369.4
- m 1 1357.0 1371.0
- c 4 1375.8 1383.8
Step: AIC=1367.85
y ~ v2 + m + c
Df Deviance AIC
<none> 1353.8 1367.8
- v2 1 1357.2 1369.2
- m 1 1358.4 1370.4
- c 4 1377.7 1383.7
Start: AIC=1268.13
y ~ v1 + v2 + m + b + c + co
Df Deviance AIC
- co 1 1248.2 1266.2
- b 1 1248.5 1266.5
- v1 1 1248.7 1266.7
<none> 1248.1 1268.1
- m 1 1260.7 1278.7
- v2 1 1265.0 1283.0
- c 4 1342.6 1354.6
Step: AIC=1266.15
y ~ v1 + v2 + m + b + c
Df Deviance AIC
- b 1 1248.5 1264.5
- v1 1 1248.7 1264.7
<none> 1248.2 1266.2
- m 1 1260.7 1276.7
- v2 1 1265.0 1281.0
- c 4 1342.7 1352.7
Step: AIC=1264.55
y ~ v1 + v2 + m + c
Df Deviance AIC
- v1 1 1249.1 1263.1
<none> 1248.5 1264.5
- m 1 1261.2 1275.2
- v2 1 1265.3 1279.3
- c 4 1342.9 1350.9
Step: AIC=1263.12
y ~ v2 + m + c
Df Deviance AIC
<none> 1249.1 1263.1
- m 1 1261.5 1273.5
- v2 1 1265.8 1277.8
- c 4 1343.6 1349.6
Start: AIC=1261.32
y ~ v1 + v2 + m + b + c + co
Df Deviance AIC
- co 1 1241.5 1259.5
- b 1 1241.6 1259.6
- v1 1 1241.7 1259.7
<none> 1241.3 1261.3
- m 1 1249.0 1267.0
- v2 1 1252.9 1270.9
- c 4 1342.1 1354.1
Step: AIC=1259.45
y ~ v1 + v2 + m + b + c
Df Deviance AIC
- b 1 1241.8 1257.8
- v1 1 1241.9 1257.9
<none> 1241.5 1259.5
- m 1 1249.1 1265.1
- v2 1 1253.1 1269.1
- c 4 1342.1 1352.1
Step: AIC=1257.78
y ~ v1 + v2 + m + c
Df Deviance AIC
- v1 1 1242.2 1256.2
<none> 1241.8 1257.8
- m 1 1249.5 1263.5
- v2 1 1253.3 1267.3
- c 4 1342.2 1350.2
Step: AIC=1256.22
y ~ v2 + m + c
Df Deviance AIC
<none> 1242.2 1256.2
- m 1 1249.8 1261.8
- v2 1 1253.8 1265.8
- c 4 1342.8 1348.8
Start: AIC=1252.8
y ~ v1 + v2 + m + b + c + co
Df Deviance AIC
- b 1 1232.8 1250.8
- co 1 1232.8 1250.8
- v1 1 1234.0 1252.0
<none> 1232.8 1252.8
- m 1 1235.7 1253.7
- v2 1 1237.3 1255.3
- c 4 1341.8 1353.8
Step: AIC=1250.8
y ~ v1 + v2 + m + c + co
Df Deviance AIC
- co 1 1232.8 1248.8
- v1 1 1234.0 1250.0
<none> 1232.8 1250.8
- m 1 1235.7 1251.7
- v2 1 1237.3 1253.3
- c 4 1341.8 1351.8
Step: AIC=1248.82
y ~ v1 + v2 + m + c
Df Deviance AIC
- v1 1 1234.1 1248.1
<none> 1232.8 1248.8
- m 1 1235.8 1249.8
- v2 1 1237.3 1251.3
- c 4 1341.9 1349.9
Step: AIC=1248.06
y ~ v2 + m + c
Df Deviance AIC
<none> 1234.1 1248.1
- m 1 1236.8 1248.8
- v2 1 1238.6 1250.6
- c 4 1343.2 1349.2
Start: AIC=1247.55
y ~ v1 + v2 + m + b + c + co
Df Deviance AIC
- co 1 1227.6 1245.6
- b 1 1227.6 1245.6
- v1 1 1228.3 1246.3
- m 1 1228.5 1246.5
- v2 1 1228.8 1246.8
<none> 1227.5 1247.5
- c 4 1339.9 1351.9
Step: AIC=1245.58
y ~ v1 + v2 + m + b + c
Df Deviance AIC
- b 1 1227.6 1243.6
- v1 1 1228.4 1244.4
- m 1 1228.6 1244.6
- v2 1 1228.8 1244.8
<none> 1227.6 1245.6
- c 4 1340.0 1350.0
Step: AIC=1243.61
y ~ v1 + v2 + m + c
Df Deviance AIC
- v1 1 1228.4 1242.4
- m 1 1228.6 1242.6
- v2 1 1228.8 1242.8
<none> 1227.6 1243.6
- c 4 1340.1 1348.1
Step: AIC=1242.39
y ~ v2 + m + c
Df Deviance AIC
- m 1 1229.3 1241.3
- v2 1 1229.6 1241.6
<none> 1228.4 1242.4
- c 4 1341.0 1347.0
Step: AIC=1241.27
y ~ v2 + c
Df Deviance AIC
- v2 1 1230.6 1240.6
<none> 1229.3 1241.3
- c 4 1341.0 1345.0
Step: AIC=1240.56
y ~ c
Df Deviance AIC
<none> 1230.6 1240.6
- c 4 1341.9 1343.9
Start: AIC=1247.55
y ~ v1 + v2 + m + b + c + co
Df Deviance AIC
- co 1 1227.6 1245.6
- b 1 1227.6 1245.6
- v1 1 1228.3 1246.3
- m 1 1228.5 1246.5
- v2 1 1228.8 1246.8
<none> 1227.5 1247.5
- c 4 1339.9 1351.9
Step: AIC=1245.58
y ~ v1 + v2 + m + b + c
Df Deviance AIC
- b 1 1227.6 1243.6
- v1 1 1228.4 1244.4
- m 1 1228.6 1244.6
- v2 1 1228.8 1244.8
<none> 1227.6 1245.6
- c 4 1340.0 1350.0
Step: AIC=1243.61
y ~ v1 + v2 + m + c
Df Deviance AIC
- v1 1 1228.4 1242.4
- m 1 1228.6 1242.6
- v2 1 1228.8 1242.8
<none> 1227.6 1243.6
- c 4 1340.1 1348.1
Step: AIC=1242.39
y ~ v2 + m + c
Df Deviance AIC
- m 1 1229.3 1241.3
- v2 1 1229.6 1241.6
<none> 1228.4 1242.4
- c 4 1341.0 1347.0
Step: AIC=1241.27
y ~ v2 + c
Df Deviance AIC
- v2 1 1230.6 1240.6
<none> 1229.3 1241.3
- c 4 1341.0 1345.0
Step: AIC=1240.56
y ~ c
Df Deviance AIC
<none> 1230.6 1240.6
- c 4 1341.9 1343.9
Start: AIC=1370.52
y ~ v1 + v2 + m + b + c + co
Df Deviance AIC
- co 1 1350.6 1368.6
- b 1 1352.0 1370.0
- v1 1 1352.4 1370.4
<none> 1350.5 1370.5
- v2 1 1353.8 1371.8
- m 1 1355.5 1373.5
- c 4 1374.2 1386.2
Step: AIC=1368.58
y ~ v1 + v2 + m + b + c
Df Deviance AIC
- b 1 1352.0 1368.0
- v1 1 1352.5 1368.5
<none> 1350.6 1368.6
- v2 1 1353.8 1369.8
- m 1 1355.6 1371.6
- c 4 1374.2 1384.2
Step: AIC=1368.05
y ~ v1 + v2 + m + c
Df Deviance AIC
- v1 1 1353.8 1367.8
<none> 1352.0 1368.0
- v2 1 1355.4 1369.4
- m 1 1357.0 1371.0
- c 4 1375.8 1383.8
Step: AIC=1367.85
y ~ v2 + m + c
Df Deviance AIC
<none> 1353.8 1367.8
- v2 1 1357.2 1369.2
- m 1 1358.4 1370.4
- c 4 1377.7 1383.7
Start: AIC=1268.13
y ~ v1 + v2 + m + b + c + co
Df Deviance AIC
- co 1 1248.2 1266.2
- b 1 1248.5 1266.5
- v1 1 1248.7 1266.7
<none> 1248.1 1268.1
- m 1 1260.7 1278.7
- v2 1 1265.0 1283.0
- c 4 1342.6 1354.6
Step: AIC=1266.15
y ~ v1 + v2 + m + b + c
Df Deviance AIC
- b 1 1248.5 1264.5
- v1 1 1248.7 1264.7
<none> 1248.2 1266.2
- m 1 1260.7 1276.7
- v2 1 1265.0 1281.0
- c 4 1342.7 1352.7
Step: AIC=1264.55
y ~ v1 + v2 + m + c
Df Deviance AIC
- v1 1 1249.1 1263.1
<none> 1248.5 1264.5
- m 1 1261.2 1275.2
- v2 1 1265.3 1279.3
- c 4 1342.9 1350.9
Step: AIC=1263.12
y ~ v2 + m + c
Df Deviance AIC
<none> 1249.1 1263.1
- m 1 1261.5 1273.5
- v2 1 1265.8 1277.8
- c 4 1343.6 1349.6
Start: AIC=1261.32
y ~ v1 + v2 + m + b + c + co
Df Deviance AIC
- co 1 1241.5 1259.5
- b 1 1241.6 1259.6
- v1 1 1241.7 1259.7
<none> 1241.3 1261.3
- m 1 1249.0 1267.0
- v2 1 1252.9 1270.9
- c 4 1342.1 1354.1
Step: AIC=1259.45
y ~ v1 + v2 + m + b + c
Df Deviance AIC
- b 1 1241.8 1257.8
- v1 1 1241.9 1257.9
<none> 1241.5 1259.5
- m 1 1249.1 1265.1
- v2 1 1253.1 1269.1
- c 4 1342.1 1352.1
Step: AIC=1257.78
y ~ v1 + v2 + m + c
Df Deviance AIC
- v1 1 1242.2 1256.2
<none> 1241.8 1257.8
- m 1 1249.5 1263.5
- v2 1 1253.3 1267.3
- c 4 1342.2 1350.2
Step: AIC=1256.22
y ~ v2 + m + c
Df Deviance AIC
<none> 1242.2 1256.2
- m 1 1249.8 1261.8
- v2 1 1253.8 1265.8
- c 4 1342.8 1348.8
Start: AIC=1252.8
y ~ v1 + v2 + m + b + c + co
Df Deviance AIC
- b 1 1232.8 1250.8
- co 1 1232.8 1250.8
- v1 1 1234.0 1252.0
<none> 1232.8 1252.8
- m 1 1235.7 1253.7
- v2 1 1237.3 1255.3
- c 4 1341.8 1353.8
Step: AIC=1250.8
y ~ v1 + v2 + m + c + co
Df Deviance AIC
- co 1 1232.8 1248.8
- v1 1 1234.0 1250.0
<none> 1232.8 1250.8
- m 1 1235.7 1251.7
- v2 1 1237.3 1253.3
- c 4 1341.8 1351.8
Step: AIC=1248.82
y ~ v1 + v2 + m + c
Df Deviance AIC
- v1 1 1234.1 1248.1
<none> 1232.8 1248.8
- m 1 1235.8 1249.8
- v2 1 1237.3 1251.3
- c 4 1341.9 1349.9
Step: AIC=1248.06
y ~ v2 + m + c
Df Deviance AIC
<none> 1234.1 1248.1
- m 1 1236.8 1248.8
- v2 1 1238.6 1250.6
- c 4 1343.2 1349.2
Start: AIC=1247.55
y ~ v1 + v2 + m + b + c + co
Df Deviance AIC
- co 1 1227.6 1245.6
- b 1 1227.6 1245.6
- v1 1 1228.3 1246.3
- m 1 1228.5 1246.5
- v2 1 1228.8 1246.8
<none> 1227.5 1247.5
- c 4 1339.9 1351.9
Step: AIC=1245.58
y ~ v1 + v2 + m + b + c
Df Deviance AIC
- b 1 1227.6 1243.6
- v1 1 1228.4 1244.4
- m 1 1228.6 1244.6
- v2 1 1228.8 1244.8
<none> 1227.6 1245.6
- c 4 1340.0 1350.0
Step: AIC=1243.61
y ~ v1 + v2 + m + c
Df Deviance AIC
- v1 1 1228.4 1242.4
- m 1 1228.6 1242.6
- v2 1 1228.8 1242.8
<none> 1227.6 1243.6
- c 4 1340.1 1348.1
Step: AIC=1242.39
y ~ v2 + m + c
Df Deviance AIC
- m 1 1229.3 1241.3
- v2 1 1229.6 1241.6
<none> 1228.4 1242.4
- c 4 1341.0 1347.0
Step: AIC=1241.27
y ~ v2 + c
Df Deviance AIC
- v2 1 1230.6 1240.6
<none> 1229.3 1241.3
- c 4 1341.0 1345.0
Step: AIC=1240.56
y ~ c
Df Deviance AIC
<none> 1230.6 1240.6
- c 4 1341.9 1343.9
Start: AIC=1247.55
y ~ v1 + v2 + m + b + c + co
Df Deviance AIC
- co 1 1227.6 1245.6
- b 1 1227.6 1245.6
- v1 1 1228.3 1246.3
- m 1 1228.5 1246.5
- v2 1 1228.8 1246.8
<none> 1227.5 1247.5
- c 4 1339.9 1351.9
Step: AIC=1245.58
y ~ v1 + v2 + m + b + c
Df Deviance AIC
- b 1 1227.6 1243.6
- v1 1 1228.4 1244.4
- m 1 1228.6 1244.6
- v2 1 1228.8 1244.8
<none> 1227.6 1245.6
- c 4 1340.0 1350.0
Step: AIC=1243.61
y ~ v1 + v2 + m + c
Df Deviance AIC
- v1 1 1228.4 1242.4
- m 1 1228.6 1242.6
- v2 1 1228.8 1242.8
<none> 1227.6 1243.6
- c 4 1340.1 1348.1
Step: AIC=1242.39
y ~ v2 + m + c
Df Deviance AIC
- m 1 1229.3 1241.3
- v2 1 1229.6 1241.6
<none> 1228.4 1242.4
- c 4 1341.0 1347.0
Step: AIC=1241.27
y ~ v2 + c
Df Deviance AIC
- v2 1 1230.6 1240.6
<none> 1229.3 1241.3
- c 4 1341.0 1345.0
Step: AIC=1240.56
y ~ c
Df Deviance AIC
<none> 1230.6 1240.6
- c 4 1341.9 1343.9
Missings in variables:
Variable Count
NonD 14
Dream 12
Sleep 4
Span 4
Gest 4
Imputed missings in variables:
Variable Count
NonD 14
Dream 12
Sleep 4
Span 4
Gest 4
Time difference of 0.03119993 secs
Time difference of 0.03119993 secs
Time difference of 0.03120017 secs
Time difference of 0.03119993 secs
No missings in x.
== Failed tests ================================================================
-- Failure (test_IRMI_ordered.R:10:3): irmi base -------------------------------
`ir <- irmi(test_df, mixed = "m", count = "co")` did not produce any warnings.
-- Failure (test_IRMI_ordered.R:15:3): irmi step -------------------------------
`ir <- irmi(test_df, mixed = "m", count = "co", step = TRUE)` did not produce any warnings.
-- Failure (test_IRMI_ordered.R:20:3): irmi step noise -------------------------
`ir <- irmi(test_df, mixed = "m", count = "co", step = TRUE, noise = TRUE)` did not produce any warnings.
-- Failure (test_IRMI_ordered.R:25:3): irmi robust -----------------------------
`ir <- irmi(test_df, robust = TRUE, mixed = "m", count = "co")` did not produce any warnings.
-- Failure (test_IRMI_ordered.R:34:3): irmi robust noise -----------------------
`... <- NULL` did not produce any warnings.
-- Failure (test_IRMI_ordered.R:39:3): irmi robust noise with no imp_var -------
`... <- NULL` did not produce any warnings.
[ FAIL 6 | WARN 0 | SKIP 0 | PASS 144 ]
Error: Test failures
Execution halted
Flavor: r-oldrel-windows-ix86+x86_64
Version: 6.1.0
Check: running tests for arch ‘x64’
Result: ERROR
Running 'testthat.R' [26s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> library(testthat)
> library(VIM)
Loading required package: colorspace
Loading required package: grid
VIM is ready to use.
Suggestions and bug-reports can be submitted at: https://github.com/statistikat/VIM/issues
Attaching package: 'VIM'
The following object is masked from 'package:datasets':
sleep
> test_check("VIM")
Start: AIC=1367.2
y ~ v1 + v2 + m + b + c + co
Df Deviance AIC
- v2 1 1347.4 1365.4
- m 1 1347.6 1365.6
<none> 1347.2 1367.2
- b 1 1349.2 1367.2
- v1 1 1349.7 1367.7
- c 4 1361.4 1373.4
- co 1 1355.7 1373.7
Step: AIC=1365.37
y ~ v1 + m + b + c + co
Df Deviance AIC
- m 1 1347.8 1363.8
<none> 1347.4 1365.4
- b 1 1349.5 1365.5
- v1 1 1349.9 1365.9
- c 4 1361.5 1371.5
- co 1 1355.8 1371.8
Step: AIC=1363.79
y ~ v1 + b + c + co
Df Deviance AIC
<none> 1347.8 1363.8
- b 1 1349.8 1363.8
- v1 1 1350.2 1364.2
- c 4 1362.1 1370.1
- co 1 1356.1 1370.1
Start: AIC=1253.9
y ~ v1 + v2 + m + b + c + co
Df Deviance AIC
- v2 1 1234.0 1252.0
- m 1 1234.1 1252.1
<none> 1233.9 1253.9
- b 1 1237.5 1255.5
- v1 1 1255.1 1273.1
- co 1 1263.1 1281.1
- c 4 1296.3 1308.3
Step: AIC=1251.96
y ~ v1 + m + b + c + co
Df Deviance AIC
- m 1 1234.2 1250.2
<none> 1234.0 1252.0
- b 1 1237.6 1253.6
- v1 1 1255.1 1271.1
- co 1 1263.1 1279.1
- c 4 1296.3 1306.3
Step: AIC=1250.17
y ~ v1 + b + c + co
Df Deviance AIC
<none> 1234.2 1250.2
- b 1 1237.8 1251.8
- v1 1 1255.2 1269.2
- co 1 1263.2 1277.2
- c 4 1296.7 1304.7
Start: AIC=1250.72
y ~ v1 + v2 + m + b + c + co
Df Deviance AIC
- v2 1 1230.8 1248.8
- m 1 1230.8 1248.8
<none> 1230.7 1250.7
- b 1 1232.9 1250.9
- co 1 1256.7 1274.7
- v1 1 1257.3 1275.3
- c 4 1297.9 1309.9
Step: AIC=1248.79
y ~ v1 + m + b + c + co
Df Deviance AIC
- m 1 1230.9 1246.9
<none> 1230.8 1248.8
- b 1 1232.9 1248.9
- co 1 1256.9 1272.9
- v1 1 1257.3 1273.3
- c 4 1298.0 1308.0
Step: AIC=1246.87
y ~ v1 + b + c + co
Df Deviance AIC
<none> 1230.9 1246.9
- b 1 1233.0 1247.0
- co 1 1256.9 1270.9
- v1 1 1257.4 1271.4
- c 4 1298.2 1306.2
Start: AIC=1250.14
y ~ v1 + v2 + m + b + c + co
Df Deviance AIC
- v2 1 1230.2 1248.2
- m 1 1230.2 1248.2
- b 1 1232.1 1250.1
<none> 1230.1 1250.1
- co 1 1254.0 1272.0
- v1 1 1256.0 1274.0
- c 4 1301.5 1313.5
Step: AIC=1248.21
y ~ v1 + m + b + c + co
Df Deviance AIC
- m 1 1230.3 1246.3
- b 1 1232.1 1248.1
<none> 1230.2 1248.2
- co 1 1254.1 1270.1
- v1 1 1256.2 1272.2
- c 4 1301.6 1311.6
Step: AIC=1246.31
y ~ v1 + b + c + co
Df Deviance AIC
- b 1 1232.2 1246.2
<none> 1230.3 1246.3
- co 1 1254.1 1268.1
- v1 1 1256.2 1270.2
- c 4 1301.8 1309.8
Step: AIC=1246.23
y ~ v1 + c + co
Df Deviance AIC
<none> 1232.2 1246.2
- co 1 1255.7 1267.7
- v1 1 1257.7 1269.7
- c 4 1304.3 1310.3
Start: AIC=1367.2
y ~ v1 + v2 + m + b + c + co
Df Deviance AIC
- v2 1 1347.4 1365.4
- m 1 1347.6 1365.6
<none> 1347.2 1367.2
- b 1 1349.2 1367.2
- v1 1 1349.7 1367.7
- c 4 1361.4 1373.4
- co 1 1355.7 1373.7
Step: AIC=1365.37
y ~ v1 + m + b + c + co
Df Deviance AIC
- m 1 1347.8 1363.8
<none> 1347.4 1365.4
- b 1 1349.5 1365.5
- v1 1 1349.9 1365.9
- c 4 1361.5 1371.5
- co 1 1355.8 1371.8
Step: AIC=1363.79
y ~ v1 + b + c + co
Df Deviance AIC
<none> 1347.8 1363.8
- b 1 1349.8 1363.8
- v1 1 1350.2 1364.2
- c 4 1362.1 1370.1
- co 1 1356.1 1370.1
Start: AIC=1253.9
y ~ v1 + v2 + m + b + c + co
Df Deviance AIC
- v2 1 1234.0 1252.0
- m 1 1234.1 1252.1
<none> 1233.9 1253.9
- b 1 1237.5 1255.5
- v1 1 1255.1 1273.1
- co 1 1263.1 1281.1
- c 4 1296.3 1308.3
Step: AIC=1251.96
y ~ v1 + m + b + c + co
Df Deviance AIC
- m 1 1234.2 1250.2
<none> 1234.0 1252.0
- b 1 1237.6 1253.6
- v1 1 1255.1 1271.1
- co 1 1263.1 1279.1
- c 4 1296.3 1306.3
Step: AIC=1250.17
y ~ v1 + b + c + co
Df Deviance AIC
<none> 1234.2 1250.2
- b 1 1237.8 1251.8
- v1 1 1255.2 1269.2
- co 1 1263.2 1277.2
- c 4 1296.7 1304.7
Start: AIC=1250.72
y ~ v1 + v2 + m + b + c + co
Df Deviance AIC
- v2 1 1230.8 1248.8
- m 1 1230.8 1248.8
<none> 1230.7 1250.7
- b 1 1232.9 1250.9
- co 1 1256.7 1274.7
- v1 1 1257.3 1275.3
- c 4 1297.9 1309.9
Step: AIC=1248.79
y ~ v1 + m + b + c + co
Df Deviance AIC
- m 1 1230.9 1246.9
<none> 1230.8 1248.8
- b 1 1232.9 1248.9
- co 1 1256.9 1272.9
- v1 1 1257.3 1273.3
- c 4 1298.0 1308.0
Step: AIC=1246.87
y ~ v1 + b + c + co
Df Deviance AIC
<none> 1230.9 1246.9
- b 1 1233.0 1247.0
- co 1 1256.9 1270.9
- v1 1 1257.4 1271.4
- c 4 1298.2 1306.2
Start: AIC=1250.14
y ~ v1 + v2 + m + b + c + co
Df Deviance AIC
- v2 1 1230.2 1248.2
- m 1 1230.2 1248.2
- b 1 1232.1 1250.1
<none> 1230.1 1250.1
- co 1 1254.0 1272.0
- v1 1 1256.0 1274.0
- c 4 1301.5 1313.5
Step: AIC=1248.21
y ~ v1 + m + b + c + co
Df Deviance AIC
- m 1 1230.3 1246.3
- b 1 1232.1 1248.1
<none> 1230.2 1248.2
- co 1 1254.1 1270.1
- v1 1 1256.2 1272.2
- c 4 1301.6 1311.6
Step: AIC=1246.31
y ~ v1 + b + c + co
Df Deviance AIC
- b 1 1232.2 1246.2
<none> 1230.3 1246.3
- co 1 1254.1 1268.1
- v1 1 1256.2 1270.2
- c 4 1301.8 1309.8
Step: AIC=1246.23
y ~ v1 + c + co
Df Deviance AIC
<none> 1232.2 1246.2
- co 1 1255.7 1267.7
- v1 1 1257.7 1269.7
- c 4 1304.3 1310.3
Missings in variables:
Variable Count
NonD 14
Dream 12
Sleep 4
Span 4
Gest 4
Imputed missings in variables:
Variable Count
NonD 14
Dream 12
Sleep 4
Span 4
Gest 4
Time difference of 0.03119993 secs
Time difference of 0.03120017 secs
Time difference of 0.03119993 secs
Time difference of 0.03119993 secs
No missings in x.
== Failed tests ================================================================
-- Failure (test_IRMI_ordered.R:10:3): irmi base -------------------------------
`ir <- irmi(test_df, mixed = "m", count = "co")` did not produce any warnings.
-- Failure (test_IRMI_ordered.R:15:3): irmi step -------------------------------
`ir <- irmi(test_df, mixed = "m", count = "co", step = TRUE)` did not produce any warnings.
-- Failure (test_IRMI_ordered.R:20:3): irmi step noise -------------------------
`ir <- irmi(test_df, mixed = "m", count = "co", step = TRUE, noise = TRUE)` did not produce any warnings.
-- Failure (test_IRMI_ordered.R:25:3): irmi robust -----------------------------
`ir <- irmi(test_df, robust = TRUE, mixed = "m", count = "co")` did not produce any warnings.
-- Failure (test_IRMI_ordered.R:34:3): irmi robust noise -----------------------
`... <- NULL` did not produce any warnings.
-- Failure (test_IRMI_ordered.R:39:3): irmi robust noise with no imp_var -------
`... <- NULL` did not produce any warnings.
[ FAIL 6 | WARN 0 | SKIP 0 | PASS 144 ]
Error: Test failures
Execution halted
Flavor: r-oldrel-windows-ix86+x86_64