CRAN Package Check Results for Package bridgesampling

Last updated on 2021-01-25 00:47:53 CET.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.0-0 9.31 240.18 249.49 OK
r-devel-linux-x86_64-debian-gcc 1.0-0 7.71 176.05 183.76 OK
r-devel-linux-x86_64-fedora-clang 1.0-0 298.25 OK
r-devel-linux-x86_64-fedora-gcc 1.0-0 232.92 OK
r-devel-windows-ix86+x86_64 1.0-0 21.00 283.00 304.00 ERROR
r-patched-linux-x86_64 1.0-0 9.98 232.07 242.05 OK
r-patched-solaris-x86 1.0-0 295.50 OK
r-release-linux-x86_64 1.0-0 9.35 234.22 243.57 OK
r-release-macos-x86_64 1.0-0 OK
r-release-windows-ix86+x86_64 1.0-0 22.00 283.00 305.00 ERROR
r-oldrel-macos-x86_64 1.0-0 OK
r-oldrel-windows-ix86+x86_64 1.0-0 15.00 230.00 245.00 ERROR

Additional issues

ATLAS OpenBLAS

Check Details

Version: 1.0-0
Check: tests
Result: ERROR
     Running 'testthat.R' [151s]
    Running the tests in 'tests/testthat.R' failed.
    Complete output:
     > Sys.setenv("R_TESTS" = "")
     > library(testthat)
     >
     > test_check("bridgesampling")
     Loading required package: bridgesampling
     Median of 10 bridge sampling estimates
     of the log marginal likelihood: 4293.156
     Range of estimates: 4290.976 to 4294.028
     Interquartile range: 1.62594
     Method: normal
     make cmd is
     make -f "D:/RCompile/recent/R/etc/x64/Makeconf" -f "D:/RCompile/recent/R/etc/x64/Makevars.site" -f "D:/RCompile/recent/R/share/make/winshlib.mk" CXX='$(CXX14) $(CXX14STD)' CXXFLAGS='$(CXX14FLAGS)' CXXPICFLAGS='$(CXX14PICFLAGS)' SHLIB_LDFLAGS='$(SHLIB_CXX14LDFLAGS)' SHLIB_LD='$(SHLIB_CXX14LD)' SHLIB="file43785a7c5f4b.dll" WIN=64 TCLBIN=64 OBJECTS="file43785a7c5f4b.o"
    
     make would use
     make[1]: Entering directory '/d/temp/Rtmpc3DkKe'
     if test "zfile43785a7c5f4b.o" != "z"; then \
     if test -e "file43785a7c5f4b-win.def"; then \
     echo d:/Compiler/rtools40/mingw64/bin/g++ -shared -s -static-libgcc -o file43785a7c5f4b.dll file43785a7c5f4b-win.def file43785a7c5f4b.o -L"d:/Compiler/gcc-4.9.3/local330/lib/x64" -L"d:/Compiler/gcc-4.9.3/local330/lib" -L"D:/RCompile/recent/R/bin/x64" -lR ; \
     d:/Compiler/rtools40/mingw64/bin/g++ -shared -s -static-libgcc -o file43785a7c5f4b.dll file43785a7c5f4b-win.def file43785a7c5f4b.o -L"d:/Compiler/gcc-4.9.3/local330/lib/x64" -L"d:/Compiler/gcc-4.9.3/local330/lib" -L"D:/RCompile/recent/R/bin/x64" -lR ; \
     else \
     echo EXPORTS > tmp.def; \
     d:/Compiler/rtools40/mingw64/bin/nm file43785a7c5f4b.o | sed -n 's/^.* [BCDRT] / /p' | sed -e '/[.]refptr[.]/d' -e '/[.]weak[.]/d' | sed 's/[^ ][^ ]*/"&"/g' >> tmp.def; \
     echo d:/Compiler/rtools40/mingw64/bin/g++ -shared -s -static-libgcc -o file43785a7c5f4b.dll tmp.def file43785a7c5f4b.o -L"d:/Compiler/gcc-4.9.3/local330/lib/x64" -L"d:/Compiler/gcc-4.9.3/local330/lib" -L"D:/RCompile/recent/R/bin/x64" -lR ; \
     d:/Compiler/rtools40/mingw64/bin/g++ -shared -s -static-libgcc -o file43785a7c5f4b.dll tmp.def file43785a7c5f4b.o -L"d:/Compiler/gcc-4.9.3/local330/lib/x64" -L"d:/Compiler/gcc-4.9.3/local330/lib" -L"D:/RCompile/recent/R/bin/x64" -lR ; \
     rm -f tmp.def; \
     fi \
     fi
     make[1]: Leaving directory '/d/temp/Rtmpc3DkKe'
     starting worker pid=73564 on localhost:11538 at 18:55:24.586
     starting worker pid=98440 on localhost:11538 at 18:55:24.945
    
     SAMPLING FOR MODEL 'continuous' NOW (CHAIN 1).
     Chain 1:
     Chain 1: Gradient evaluation took 0 seconds
     Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0 seconds.
     Chain 1: Adjust your expectations accordingly!
     Chain 1:
     Chain 1:
     Chain 1: Iteration: 1 / 5000 [ 0%] (Warmup)
     Chain 1: Iteration: 500 / 5000 [ 10%] (Warmup)
     Chain 1: Iteration: 1000 / 5000 [ 20%] (Warmup)
     Chain 1: Iteration: 1500 / 5000 [ 30%] (Warmup)
     Chain 1: Iteration: 2000 / 5000 [ 40%] (Warmup)
     Chain 1: Iteration: 2500 / 5000 [ 50%] (Warmup)
     Chain 1: Iteration: 2501 / 5000 [ 50%] (Sampling)
     Chain 1: Iteration: 3000 / 5000 [ 60%] (Sampling)
     Chain 1: Iteration: 3500 / 5000 [ 70%] (Sampling)
     Chain 1: Iteration: 4000 / 5000 [ 80%] (Sampling)
     Chain 1: Iteration: 4500 / 5000 [ 90%] (Sampling)
     Chain 1: Iteration: 5000 / 5000 [100%] (Sampling)
     Chain 1:
     Chain 1: Elapsed Time: 0.406 seconds (Warm-up)
     Chain 1: 0.577 seconds (Sampling)
     Chain 1: 0.983 seconds (Total)
     Chain 1:
    
     SAMPLING FOR MODEL 'continuous' NOW (CHAIN 2).
     Chain 2:
     Chain 2: Gradient evaluation took 0 seconds
     Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 0 seconds.
     Chain 2: Adjust your expectations accordingly!
     Chain 2:
     Chain 2:
     Chain 2: Iteration: 1 / 5000 [ 0%] (Warmup)
     Chain 2: Iteration: 500 / 5000 [ 10%] (Warmup)
     Chain 2: Iteration: 1000 / 5000 [ 20%] (Warmup)
     Chain 2: Iteration: 1500 / 5000 [ 30%] (Warmup)
     Chain 2: Iteration: 2000 / 5000 [ 40%] (Warmup)
     Chain 2: Iteration: 2500 / 5000 [ 50%] (Warmup)
     Chain 2: Iteration: 2501 / 5000 [ 50%] (Sampling)
     Chain 2: Iteration: 3000 / 5000 [ 60%] (Sampling)
     Chain 2: Iteration: 3500 / 5000 [ 70%] (Sampling)
     Chain 2: Iteration: 4000 / 5000 [ 80%] (Sampling)
     Chain 2: Iteration: 4500 / 5000 [ 90%] (Sampling)
     Chain 2: Iteration: 5000 / 5000 [100%] (Sampling)
     Chain 2:
     Chain 2: Elapsed Time: 0.406 seconds (Warm-up)
     Chain 2: 0.608 seconds (Sampling)
     Chain 2: 1.014 seconds (Total)
     Chain 2:
     Iteration: 1
     Iteration: 2
     Iteration: 3
     Iteration: 4
     Iteration: 5
     starting worker pid=12284 on localhost:11538 at 18:55:47.154
     starting worker pid=18608 on localhost:11538 at 18:55:47.513
    
     SAMPLING FOR MODEL 'continuous' NOW (CHAIN 1).
     Chain 1:
     Chain 1: Gradient evaluation took 0 seconds
     Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0 seconds.
     Chain 1: Adjust your expectations accordingly!
     Chain 1:
     Chain 1:
     Chain 1: Iteration: 1 / 5000 [ 0%] (Warmup)
     Chain 1: Iteration: 500 / 5000 [ 10%] (Warmup)
     Chain 1: Iteration: 1000 / 5000 [ 20%] (Warmup)
     Chain 1: Iteration: 1500 / 5000 [ 30%] (Warmup)
     Chain 1: Iteration: 2000 / 5000 [ 40%] (Warmup)
     Chain 1: Iteration: 2500 / 5000 [ 50%] (Warmup)
     Chain 1: Iteration: 2501 / 5000 [ 50%] (Sampling)
     Chain 1: Iteration: 3000 / 5000 [ 60%] (Sampling)
     Chain 1: Iteration: 3500 / 5000 [ 70%] (Sampling)
    
     SAMPLING FOR MODEL 'continuous' NOW (CHAIN 2).
     Chain 2:
     Chain 2: Gradient evaluation took 0.001 seconds
     Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 10 seconds.
     Chain 2: Adjust your expectations accordingly!
     Chain 2:
     Chain 2:
     Chain 2: Iteration: 1 / 5000 [ 0%] (Warmup)
     Chain 1: Iteration: 4000 / 5000 [ 80%] (Sampling)
     Chain 2: Iteration: 500 / 5000 [ 10%] (Warmup)
     Chain 2: Iteration: 1000 / 5000 [ 20%] (Warmup)
     Chain 1: Iteration: 4500 / 5000 [ 90%] (Sampling)
     Chain 2: Iteration: 1500 / 5000 [ 30%] (Warmup)
     Chain 2: Iteration: 2000 / 5000 [ 40%] (Warmup)
     Chain 1: Iteration: 5000 / 5000 [100%] (Sampling)
     Chain 1:
     Chain 1: Elapsed Time: 0.818 seconds (Warm-up)
     Chain 1: 1.373 seconds (Sampling)
     Chain 1: 2.191 seconds (Total)
     Chain 1:
     Chain 2: Iteration: 2500 / 5000 [ 50%] (Warmup)
     Chain 2: Iteration: 2501 / 5000 [ 50%] (Sampling)
     Chain 2: Iteration: 3000 / 5000 [ 60%] (Sampling)
     Chain 2: Iteration: 3500 / 5000 [ 70%] (Sampling)
     Chain 2: Iteration: 4000 / 5000 [ 80%] (Sampling)
     Chain 2: Iteration: 4500 / 5000 [ 90%] (Sampling)
     Chain 2: Iteration: 5000 / 5000 [100%] (Sampling)
     Chain 2:
     Chain 2: Elapsed Time: 0.819 seconds (Warm-up)
     Chain 2: 0.889 seconds (Sampling)
     Chain 2: 1.708 seconds (Total)
     Chain 2:
     Iteration: 1
     Iteration: 2
     Iteration: 3
     Iteration: 4
     == Skipped tests ===============================================================
     * On CRAN (13)
    
     == Failed tests ================================================================
     -- Error (test-stan_bridge_sampler_basic.R:56:5): stan_bridge_sampler ----------
     Error: D:/Compiler/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: file43785a7c5f4b.o:file43785a7c5f4b.cpp:(.text$_ZN3tbb8internal26task_scheduler_observer_v3D1Ev[_ZN3tbb8internal26task_scheduler_observer_v3D1Ev]+0x14): undefined reference to `tbb::internal::task_scheduler_observer_v3::observe(bool)'D:/Compiler/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: file43785a7c5f4b.o:file43785a7c5f4b.cpp:(.text$_ZN3tbb8internal26task_scheduler_observer_v3D0Ev[_ZN3tbb8internal26task_scheduler_observer_v3D0Ev]+0x1c): undefined reference to `tbb::internal::task_scheduler_observer_v3::observe(bool)'D:/Compiler/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: file43785a7c5f4b.o:file43785a7c5f4b.cpp:(.text$_ZN4stan4math16ad_tape_observerD1Ev[_ZN4stan4math16ad_tape_observerD1Ev]+0x15): undefined reference to `tbb::internal::task_scheduler_observer_v3::observe(bool)'D:/Compiler/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: file43785a7c5f4b.o:file43785a7c5f4b.cpp:(.text$_ZN4stan4math16ad_tape_observerD1Ev[_ZN4stan4math16ad_tape_observerD1Ev]+0x47): undefined reference to `tbb::internal::task_scheduler_observer_v3::observe(bool)'D:/Compiler/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: file43785a7c5f4b.o:file43785a7c5f4b.cpp:(.text$_ZN4stan4math16ad_tape_observerD0Ev[_ZN4stan4math16ad_tape_observerD0Ev]+0x15): more undefined references to `tbb::internal::task_scheduler_observer_v3::observe(bool)' followcollect2.exe: error: ld returned 1 exit status
     Backtrace:
     x
     1. +-utils::capture.output(...) test-stan_bridge_sampler_basic.R:56:4
     2. | \-base::withVisible(...elt(i))
     3. +-base::suppressMessages(...)
     4. | \-base::withCallingHandlers(...)
     5. \-rstan::stan_model(model_code = stancodeH0, model_name = "stanmodel")
     6. \-rstan:::cxxfunctionplus(...)
     7. +-pkgbuild::with_build_tools(...)
     8. | \-withr::with_path(rtools_path(), code)
     9. | \-base::force(code)
     10. \-inline::cxxfunction(...)
     11. \-inline:::compileCode(f, code, language = language, verbose = verbose)
     -- Error (test-stan_bridge_sampler_basic.R:56:5): stan_bridge_sampler ----------
     Error: invalid connection
     Backtrace:
     x
     1. +-utils::capture.output(...) test-stan_bridge_sampler_basic.R:56:4
     2. | \-base::withVisible(...elt(i))
     3. +-base::suppressMessages(...)
     4. | \-base::withCallingHandlers(...)
     5. \-rstan::stan_model(model_code = stancodeH0, model_name = "stanmodel")
     6. \-rstan:::cxxfunctionplus(...)
     7. \-base::sink(type = "output")
    
     [ FAIL 2 | WARN 0 | SKIP 13 | PASS 64 ]
     Error: Test failures
     Execution halted
Flavor: r-devel-windows-ix86+x86_64

Version: 1.0-0
Check: tests
Result: ERROR
     Running 'testthat.R' [152s]
    Running the tests in 'tests/testthat.R' failed.
    Complete output:
     > Sys.setenv("R_TESTS" = "")
     > library(testthat)
     >
     > test_check("bridgesampling")
     Loading required package: bridgesampling
     Median of 10 bridge sampling estimates
     of the log marginal likelihood: 4293.156
     Range of estimates: 4290.976 to 4294.028
     Interquartile range: 1.62594
     Method: normal
     make cmd is
     make -f "D:/RCompile/recent/R-40~1.3/etc/x64/Makeconf" -f "D:/RCompile/recent/R-40~1.3/etc/x64/Makevars.site" -f "D:/RCompile/recent/R-40~1.3/share/make/winshlib.mk" CXX='$(CXX14) $(CXX14STD)' CXXFLAGS='$(CXX14FLAGS)' CXXPICFLAGS='$(CXX14PICFLAGS)' SHLIB_LDFLAGS='$(SHLIB_CXX14LDFLAGS)' SHLIB_LD='$(SHLIB_CXX14LD)' SHLIB="file1443c29313221.dll" WIN=64 TCLBIN=64 OBJECTS="file1443c29313221.o"
    
     make would use
     make[1]: Entering directory '/d/temp/RtmpIzvtHU'
     if test "zfile1443c29313221.o" != "z"; then \
     if test -e "file1443c29313221-win.def"; then \
     echo d:/Compiler/rtools40/mingw64/bin/g++ -shared -s -static-libgcc -o file1443c29313221.dll file1443c29313221-win.def file1443c29313221.o -L"d:/Compiler/gcc-4.9.3/local330/lib/x64" -L"d:/Compiler/gcc-4.9.3/local330/lib" -L"D:/RCompile/recent/R-40~1.3/bin/x64" -lR ; \
     d:/Compiler/rtools40/mingw64/bin/g++ -shared -s -static-libgcc -o file1443c29313221.dll file1443c29313221-win.def file1443c29313221.o -L"d:/Compiler/gcc-4.9.3/local330/lib/x64" -L"d:/Compiler/gcc-4.9.3/local330/lib" -L"D:/RCompile/recent/R-40~1.3/bin/x64" -lR ; \
     else \
     echo EXPORTS > tmp.def; \
     d:/Compiler/rtools40/mingw64/bin/nm file1443c29313221.o | sed -n 's/^.* [BCDRT] / /p' | sed -e '/[.]refptr[.]/d' -e '/[.]weak[.]/d' | sed 's/[^ ][^ ]*/"&"/g' >> tmp.def; \
     echo d:/Compiler/rtools40/mingw64/bin/g++ -shared -s -static-libgcc -o file1443c29313221.dll tmp.def file1443c29313221.o -L"d:/Compiler/gcc-4.9.3/local330/lib/x64" -L"d:/Compiler/gcc-4.9.3/local330/lib" -L"D:/RCompile/recent/R-40~1.3/bin/x64" -lR ; \
     d:/Compiler/rtools40/mingw64/bin/g++ -shared -s -static-libgcc -o file1443c29313221.dll tmp.def file1443c29313221.o -L"d:/Compiler/gcc-4.9.3/local330/lib/x64" -L"d:/Compiler/gcc-4.9.3/local330/lib" -L"D:/RCompile/recent/R-40~1.3/bin/x64" -lR ; \
     rm -f tmp.def; \
     fi \
     fi
     make[1]: Leaving directory '/d/temp/RtmpIzvtHU'
     starting worker pid=45168 on localhost:11477 at 00:46:19.038
     starting worker pid=85648 on localhost:11477 at 00:46:19.428
    
     SAMPLING FOR MODEL 'continuous' NOW (CHAIN 1).
     Chain 1:
     Chain 1: Gradient evaluation took 0 seconds
     Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0 seconds.
     Chain 1: Adjust your expectations accordingly!
     Chain 1:
     Chain 1:
     Chain 1: Iteration: 1 / 5000 [ 0%] (Warmup)
     Chain 1: Iteration: 500 / 5000 [ 10%] (Warmup)
     Chain 1: Iteration: 1000 / 5000 [ 20%] (Warmup)
     Chain 1: Iteration: 1500 / 5000 [ 30%] (Warmup)
     Chain 1: Iteration: 2000 / 5000 [ 40%] (Warmup)
     Chain 1: Iteration: 2500 / 5000 [ 50%] (Warmup)
     Chain 1: Iteration: 2501 / 5000 [ 50%] (Sampling)
     Chain 1: Iteration: 3000 / 5000 [ 60%] (Sampling)
     Chain 1: Iteration: 3500 / 5000 [ 70%] (Sampling)
     Chain 1: Iteration: 4000 / 5000 [ 80%] (Sampling)
     Chain 1: Iteration: 4500 / 5000 [ 90%] (Sampling)
     Chain 1: Iteration: 5000 / 5000 [100%] (Sampling)
     Chain 1:
     Chain 1: Elapsed Time: 0.468 seconds (Warm-up)
     Chain 1: 0.609 seconds (Sampling)
     Chain 1: 1.077 seconds (Total)
     Chain 1:
    
     SAMPLING FOR MODEL 'continuous' NOW (CHAIN 2).
     Chain 2:
     Chain 2: Gradient evaluation took 0 seconds
     Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 0 seconds.
     Chain 2: Adjust your expectations accordingly!
     Chain 2:
     Chain 2:
     Chain 2: Iteration: 1 / 5000 [ 0%] (Warmup)
     Chain 2: Iteration: 500 / 5000 [ 10%] (Warmup)
     Chain 2: Iteration: 1000 / 5000 [ 20%] (Warmup)
     Chain 2: Iteration: 1500 / 5000 [ 30%] (Warmup)
     Chain 2: Iteration: 2000 / 5000 [ 40%] (Warmup)
     Chain 2: Iteration: 2500 / 5000 [ 50%] (Warmup)
     Chain 2: Iteration: 2501 / 5000 [ 50%] (Sampling)
     Chain 2: Iteration: 3000 / 5000 [ 60%] (Sampling)
     Chain 2: Iteration: 3500 / 5000 [ 70%] (Sampling)
     Chain 2: Iteration: 4000 / 5000 [ 80%] (Sampling)
     Chain 2: Iteration: 4500 / 5000 [ 90%] (Sampling)
     Chain 2: Iteration: 5000 / 5000 [100%] (Sampling)
     Chain 2:
     Chain 2: Elapsed Time: 0.405 seconds (Warm-up)
     Chain 2: 1.03 seconds (Sampling)
     Chain 2: 1.435 seconds (Total)
     Chain 2:
     Iteration: 1
     Iteration: 2
     Iteration: 3
     Iteration: 4
     Iteration: 5
     starting worker pid=19556 on localhost:11477 at 00:46:43.243
     starting worker pid=96976 on localhost:11477 at 00:46:43.633
    
     SAMPLING FOR MODEL 'continuous' NOW (CHAIN 1).
     Chain 1:
     Chain 1: Gradient evaluation took 0 seconds
     Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0 seconds.
     Chain 1: Adjust your expectations accordingly!
     Chain 1:
     Chain 1:
     Chain 1: Iteration: 1 / 5000 [ 0%] (Warmup)
     Chain 1: Iteration: 500 / 5000 [ 10%] (Warmup)
     Chain 1: Iteration: 1000 / 5000 [ 20%] (Warmup)
     Chain 1: Iteration: 1500 / 5000 [ 30%] (Warmup)
     Chain 1: Iteration: 2000 / 5000 [ 40%] (Warmup)
     Chain 1: Iteration: 2500 / 5000 [ 50%] (Warmup)
     Chain 1: Iteration: 2501 / 5000 [ 50%] (Sampling)
     Chain 1: Iteration: 3000 / 5000 [ 60%] (Sampling)
     Chain 1: Iteration: 3500 / 5000 [ 70%] (Sampling)
    
     SAMPLING FOR MODEL 'continuous' NOW (CHAIN 2).
     Chain 2:
     Chain 2: Gradient evaluation took 0 seconds
     Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 0 seconds.
     Chain 2: Adjust your expectations accordingly!
     Chain 2:
     Chain 2:
     Chain 2: Iteration: 1 / 5000 [ 0%] (Warmup)
     Chain 1: Iteration: 4000 / 5000 [ 80%] (Sampling)
     Chain 2: Iteration: 500 / 5000 [ 10%] (Warmup)
     Chain 2: Iteration: 1000 / 5000 [ 20%] (Warmup)
     Chain 1: Iteration: 4500 / 5000 [ 90%] (Sampling)
     Chain 2: Iteration: 1500 / 5000 [ 30%] (Warmup)
     Chain 2: Iteration: 2000 / 5000 [ 40%] (Warmup)
     Chain 1: Iteration: 5000 / 5000 [100%] (Sampling)
     Chain 1:
     Chain 1: Elapsed Time: 0.811 seconds (Warm-up)
     Chain 1: 1.357 seconds (Sampling)
     Chain 1: 2.168 seconds (Total)
     Chain 1:
     Chain 2: Iteration: 2500 / 5000 [ 50%] (Warmup)
     Chain 2: Iteration: 2501 / 5000 [ 50%] (Sampling)
     Chain 2: Iteration: 3000 / 5000 [ 60%] (Sampling)
     Chain 2: Iteration: 3500 / 5000 [ 70%] (Sampling)
     Chain 2: Iteration: 4000 / 5000 [ 80%] (Sampling)
     Chain 2: Iteration: 4500 / 5000 [ 90%] (Sampling)
     Chain 2: Iteration: 5000 / 5000 [100%] (Sampling)
     Chain 2:
     Chain 2: Elapsed Time: 0.78 seconds (Warm-up)
     Chain 2: 0.936 seconds (Sampling)
     Chain 2: 1.716 seconds (Total)
     Chain 2:
     Iteration: 1
     Iteration: 2
     Iteration: 3
     Iteration: 4
     == Skipped tests ===============================================================
     * On CRAN (13)
    
     == Failed tests ================================================================
     -- Error (???): stan_bridge_sampler --------------------------------------------
     Error: D:/Compiler/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: file1443c29313221.o:file1443c29313221.cpp:(.text$_ZN3tbb8internal26task_scheduler_observer_v3D1Ev[_ZN3tbb8internal26task_scheduler_observer_v3D1Ev]+0x14): undefined reference to `tbb::internal::task_scheduler_observer_v3::observe(bool)'D:/Compiler/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: file1443c29313221.o:file1443c29313221.cpp:(.text$_ZN3tbb8internal26task_scheduler_observer_v3D0Ev[_ZN3tbb8internal26task_scheduler_observer_v3D0Ev]+0x1c): undefined reference to `tbb::internal::task_scheduler_observer_v3::observe(bool)'D:/Compiler/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: file1443c29313221.o:file1443c29313221.cpp:(.text$_ZN4stan4math16ad_tape_observerD1Ev[_ZN4stan4math16ad_tape_observerD1Ev]+0x15): undefined reference to `tbb::internal::task_scheduler_observer_v3::observe(bool)'D:/Compiler/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: file1443c29313221.o:file1443c29313221.cpp:(.text$_ZN4stan4math16ad_tape_observerD1Ev[_ZN4stan4math16ad_tape_observerD1Ev]+0x47): undefined reference to `tbb::internal::task_scheduler_observer_v3::observe(bool)'D:/Compiler/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: file1443c29313221.o:file1443c29313221.cpp:(.text$_ZN4stan4math16ad_tape_observerD0Ev[_ZN4stan4math16ad_tape_observerD0Ev]+0x15): more undefined references to `tbb::internal::task_scheduler_observer_v3::observe(bool)' followcollect2.exe: error: ld returned 1 exit status
     Backtrace:
     x
     1. +-base::suppressMessages(...)
     2. | \-base::withCallingHandlers(...)
     3. \-rstan::stan_model(model_code = stancodeH0, model_name = "stanmodel")
     4. \-rstan:::cxxfunctionplus(...)
     5. +-pkgbuild::with_build_tools(...)
     6. | \-withr::with_path(rtools_path(), code)
     7. | \-base::force(code)
     8. \-inline::cxxfunction(...)
     9. \-inline:::compileCode(f, code, language = language, verbose = verbose)
     -- Error (???): stan_bridge_sampler --------------------------------------------
     Error: invalid connection
     Backtrace:
     x
     1. +-base::suppressMessages(...)
     2. | \-base::withCallingHandlers(...)
     3. \-rstan::stan_model(model_code = stancodeH0, model_name = "stanmodel")
     4. \-rstan:::cxxfunctionplus(...)
     5. \-base::sink(type = "output")
    
     [ FAIL 2 | WARN 0 | SKIP 13 | PASS 64 ]
     Error: Test failures
     Execution halted
Flavor: r-release-windows-ix86+x86_64

Version: 1.0-0
Check: tests
Result: ERROR
     Running 'testthat.R' [122s]
    Running the tests in 'tests/testthat.R' failed.
    Complete output:
     > Sys.setenv("R_TESTS" = "")
     > library(testthat)
     >
     > test_check("bridgesampling")
     Loading required package: bridgesampling
     Median of 10 bridge sampling estimates
     of the log marginal likelihood: 4293.156
     Range of estimates: 4290.976 to 4294.028
     Interquartile range: 1.62594
     Method: normal
     make cmd is
     make -f "D:/RCompile/recent/R-36~1.3/etc/x64/Makeconf" -f "D:/RCompile/recent/R-36~1.3/etc/x64/Makevars.site" -f "D:/RCompile/recent/R-36~1.3/share/make/winshlib.mk" CXX='$(CXX11) $(CXX11STD)' CXXFLAGS='$(CXX11FLAGS)' CXXPICFLAGS='$(CXX11PICFLAGS)' SHLIB_LDFLAGS='$(SHLIB_CXX11LDFLAGS)' SHLIB_LD='$(SHLIB_CXX11LD)' SHLIB="file19878b81358d.dll" WIN=64 TCLBIN=64 OBJECTS="file19878b81358d.o"
    
     make would use
     make[1]: Entering directory `/cygdrive/d/temp/RtmpKQWpqz'
     if test "zfile19878b81358d.o" != "z"; then \
     if test -e "file19878b81358d-win.def"; then \
     echo d:/Compiler/gcc-4.9.3/mingw_64/bin/g++ -m64 -shared -s -static-libgcc -o file19878b81358d.dll file19878b81358d-win.def file19878b81358d.o -L"d:/Compiler/gcc-4.9.3/local330/lib/x64" -L"d:/Compiler/gcc-4.9.3/local330/lib" -L"D:/RCompile/recent/R-36~1.3/bin/x64" -lR ; \
     d:/Compiler/gcc-4.9.3/mingw_64/bin/g++ -m64 -shared -s -static-libgcc -o file19878b81358d.dll file19878b81358d-win.def file19878b81358d.o -L"d:/Compiler/gcc-4.9.3/local330/lib/x64" -L"d:/Compiler/gcc-4.9.3/local330/lib" -L"D:/RCompile/recent/R-36~1.3/bin/x64" -lR ; \
     else \
     echo EXPORTS > tmp.def; \
     d:/Compiler/gcc-4.9.3/mingw_64/bin/nm file19878b81358d.o | sed -n 's/^.* [BCDRT] / /p' | sed -e '/[.]refptr[.]/d' -e '/[.]weak[.]/d' | sed 's/[^ ][^ ]*/"&"/g' >> tmp.def; \
     echo d:/Compiler/gcc-4.9.3/mingw_64/bin/g++ -m64 -shared -s -static-libgcc -o file19878b81358d.dll tmp.def file19878b81358d.o -L"d:/Compiler/gcc-4.9.3/local330/lib/x64" -L"d:/Compiler/gcc-4.9.3/local330/lib" -L"D:/RCompile/recent/R-36~1.3/bin/x64" -lR ; \
     d:/Compiler/gcc-4.9.3/mingw_64/bin/g++ -m64 -shared -s -static-libgcc -o file19878b81358d.dll tmp.def file19878b81358d.o -L"d:/Compiler/gcc-4.9.3/local330/lib/x64" -L"d:/Compiler/gcc-4.9.3/local330/lib" -L"D:/RCompile/recent/R-36~1.3/bin/x64" -lR ; \
     rm -f tmp.def; \
     fi \
     fi
     make[1]: Leaving directory `/cygdrive/d/temp/RtmpKQWpqz'
     starting worker pid=20760 on localhost:11125 at 02:11:53.974
     starting worker pid=26076 on localhost:11125 at 02:11:54.239
    
     SAMPLING FOR MODEL 'continuous' NOW (CHAIN 1).
     Chain 1:
     Chain 1: Gradient evaluation took 0 seconds
     Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0 seconds.
     Chain 1: Adjust your expectations accordingly!
     Chain 1:
     Chain 1:
     Chain 1: Iteration: 1 / 5000 [ 0%] (Warmup)
     Chain 1: Iteration: 500 / 5000 [ 10%] (Warmup)
     Chain 1: Iteration: 1000 / 5000 [ 20%] (Warmup)
     Chain 1: Iteration: 1500 / 5000 [ 30%] (Warmup)
     Chain 1: Iteration: 2000 / 5000 [ 40%] (Warmup)
     Chain 1: Iteration: 2500 / 5000 [ 50%] (Warmup)
     Chain 1: Iteration: 2501 / 5000 [ 50%] (Sampling)
     Chain 1: Iteration: 3000 / 5000 [ 60%] (Sampling)
    
     SAMPLING FOR MODEL 'continuous' NOW (CHAIN 2).
     Chain 2:
     Chain 2: Gradient evaluation took 0 seconds
     Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 0 seconds.
     Chain 2: Adjust your expectations accordingly!
     Chain 2:
     Chain 2:
     Chain 2: Iteration: 1 / 5000 [ 0%] (Warmup)
     Chain 2: Iteration: 500 / 5000 [ 10%] (Warmup)
     Chain 1: Iteration: 3500 / 5000 [ 70%] (Sampling)
     Chain 2: Iteration: 1000 / 5000 [ 20%] (Warmup)
     Chain 2: Iteration: 1500 / 5000 [ 30%] (Warmup)
     Chain 2: Iteration: 2000 / 5000 [ 40%] (Warmup)
     Chain 1: Iteration: 4000 / 5000 [ 80%] (Sampling)
     Chain 2: Iteration: 2500 / 5000 [ 50%] (Warmup)
     Chain 2: Iteration: 2501 / 5000 [ 50%] (Sampling)
     Chain 1: Iteration: 4500 / 5000 [ 90%] (Sampling)
     Chain 2: Iteration: 3000 / 5000 [ 60%] (Sampling)
     Chain 1: Iteration: 5000 / 5000 [100%] (Sampling)
     Chain 1:
     Chain 1: Elapsed Time: 0.359 seconds (Warm-up)
     Chain 1: 1.455 seconds (Sampling)
     Chain 1: 1.814 seconds (Total)
     Chain 1:
     Chain 2: Iteration: 3500 / 5000 [ 70%] (Sampling)
     Chain 2: Iteration: 4000 / 5000 [ 80%] (Sampling)
     Chain 2: Iteration: 4500 / 5000 [ 90%] (Sampling)
     Chain 2: Iteration: 5000 / 5000 [100%] (Sampling)
     Chain 2:
     Chain 2: Elapsed Time: 0.515 seconds (Warm-up)
     Chain 2: 1.466 seconds (Sampling)
     Chain 2: 1.981 seconds (Total)
     Chain 2:
     Iteration: 1
     Iteration: 2
     Iteration: 3
     Iteration: 4
     Iteration: 5
     starting worker pid=26964 on localhost:11125 at 02:12:12.239
     starting worker pid=37080 on localhost:11125 at 02:12:12.598
    
     SAMPLING FOR MODEL 'continuous' NOW (CHAIN 1).
     Chain 1:
     Chain 1: Gradient evaluation took 0 seconds
     Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0 seconds.
     Chain 1: Adjust your expectations accordingly!
     Chain 1:
     Chain 1:
     Chain 1: Iteration: 1 / 5000 [ 0%] (Warmup)
     Chain 1: Iteration: 500 / 5000 [ 10%] (Warmup)
     Chain 1: Iteration: 1000 / 5000 [ 20%] (Warmup)
     Chain 1: Iteration: 1500 / 5000 [ 30%] (Warmup)
     Chain 1: Iteration: 2000 / 5000 [ 40%] (Warmup)
     Chain 1: Iteration: 2500 / 5000 [ 50%] (Warmup)
     Chain 1: Iteration: 2501 / 5000 [ 50%] (Sampling)
    
     SAMPLING FOR MODEL 'continuous' NOW (CHAIN 2).
     Chain 2:
     Chain 2: Gradient evaluation took 0 seconds
     Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 0 seconds.
     Chain 2: Adjust your expectations accordingly!
     Chain 2:
     Chain 2:
     Chain 2: Iteration: 1 / 5000 [ 0%] (Warmup)
     Chain 2: Iteration: 500 / 5000 [ 10%] (Warmup)
     Chain 1: Iteration: 3000 / 5000 [ 60%] (Sampling)
     Chain 2: Iteration: 1000 / 5000 [ 20%] (Warmup)
     Chain 2: Iteration: 1500 / 5000 [ 30%] (Warmup)
     Chain 1: Iteration: 3500 / 5000 [ 70%] (Sampling)
     Chain 2: Iteration: 2000 / 5000 [ 40%] (Warmup)
     Chain 2: Iteration: 2500 / 5000 [ 50%] (Warmup)
     Chain 2: Iteration: 2501 / 5000 [ 50%] (Sampling)
     Chain 1: Iteration: 4000 / 5000 [ 80%] (Sampling)
     Chain 2: Iteration: 3000 / 5000 [ 60%] (Sampling)
     Chain 1: Iteration: 4500 / 5000 [ 90%] (Sampling)
     Chain 2: Iteration: 3500 / 5000 [ 70%] (Sampling)
     Chain 1: Iteration: 5000 / 5000 [100%] (Sampling)
     Chain 1:
     Chain 1: Elapsed Time: 0.733 seconds (Warm-up)
     Chain 1: 1.669 seconds (Sampling)
     Chain 1: 2.402 seconds (Total)
     Chain 1:
     Chain 2: Iteration: 4000 / 5000 [ 80%] (Sampling)
     Chain 2: Iteration: 4500 / 5000 [ 90%] (Sampling)
     Chain 2: Iteration: 5000 / 5000 [100%] (Sampling)
     Chain 2:
     Chain 2: Elapsed Time: 0.764 seconds (Warm-up)
     Chain 2: 1.685 seconds (Sampling)
     Chain 2: 2.449 seconds (Total)
     Chain 2:
     Iteration: 1
     Iteration: 2
     Iteration: 3
     Iteration: 4
     == Skipped tests ===============================================================
     * On CRAN (13)
    
     == Failed tests ================================================================
     -- Error (???): stan_bridge_sampler --------------------------------------------
     Error: file19878b81358d.o:file19878b81358d.cpp:(.text$_ZN3tbb8internal26task_scheduler_observer_v3D1Ev[_ZN3tbb8internal26task_scheduler_observer_v3D1Ev]+0x14): undefined reference to `tbb::internal::task_scheduler_observer_v3::observe(bool)'file19878b81358d.o:file19878b81358d.cpp:(.text$_ZN3tbb8internal26task_scheduler_observer_v3D0Ev[_ZN3tbb8internal26task_scheduler_observer_v3D0Ev]+0x1c): undefined reference to `tbb::internal::task_scheduler_observer_v3::observe(bool)'file19878b81358d.o:file19878b81358d.cpp:(.text$_ZN4stan4math16ad_tape_observerD1Ev[_ZN4stan4math16ad_tape_observerD1Ev]+0x15): undefined reference to `tbb::internal::task_scheduler_observer_v3::observe(bool)'file19878b81358d.o:file19878b81358d.cpp:(.text$_ZN4stan4math16ad_tape_observerD1Ev[_ZN4stan4math16ad_tape_observerD1Ev]+0x47): undefined reference to `tbb::internal::task_scheduler_observer_v3::observe(bool)'file19878b81358d.o:file19878b81358d.cpp:(.text$_ZN4stan4math16ad_tape_observerD0Ev[_ZN4stan4math16ad_tape_observerD0Ev]+0x15): more undefined references to `tbb::internal::task_scheduler_observer_v3::observe(bool)' followcollect2.exe: error: ld returned 1 exit status
     Backtrace:
     x
     1. +-base::suppressMessages(...)
     2. | \-base::withCallingHandlers(expr, message = function(c) invokeRestart("muffleMessage"))
     3. \-rstan::stan_model(model_code = stancodeH0, model_name = "stanmodel")
     4. \-rstan:::cxxfunctionplus(...)
     5. +-pkgbuild::with_build_tools(...)
     6. | \-withr::with_path(rtools_path(), code)
     7. | \-base::force(code)
     8. \-inline::cxxfunction(...)
     9. \-inline:::compileCode(f, code, language = language, verbose = verbose)
     -- Error (???): stan_bridge_sampler --------------------------------------------
     Error: invalid connection
     Backtrace:
     x
     1. +-base::suppressMessages(...)
     2. | \-base::withCallingHandlers(expr, message = function(c) invokeRestart("muffleMessage"))
     3. \-rstan::stan_model(model_code = stancodeH0, model_name = "stanmodel")
     4. \-rstan:::cxxfunctionplus(...)
     5. \-base::sink(type = "output")
    
     [ FAIL 2 | WARN 0 | SKIP 13 | PASS 64 ]
     Error: Test failures
     Execution halted
Flavor: r-oldrel-windows-ix86+x86_64