EpiNow2: Estimate Real-Time Case Counts and Time-Varying Epidemiological Parameters

Estimates the time-varying reproduction number, rate of spread, and doubling time using a range of open-source tools (Abbott et al. (2020) <doi:10.12688/wellcomeopenres.16006.1>), and current best practices (Gostic et al. (2020) <doi:10.1101/2020.06.18.20134858>). It aims to help users avoid some of the limitations of naive implementations in a framework that is informed by community feedback and is under active development.

Version:	1.3.2
Depends:	R (≥ 3.4.0)
Imports:	cowplot, data.table, futile.logger (≥ 1.4), future, future.apply, ggplot2, lubridate, methods, patchwork, progressr, purrr, R.utils (≥ 2.0.0), Rcpp (≥ 0.12.0), rlang (≥ 0.4.7), rstan (≥ 2.21.1), runner, scales, stats, truncnorm, lifecycle, utils
LinkingTo:	BH (≥ 1.66.0), Rcpp (≥ 0.12.0), RcppEigen (≥ 0.3.3.3.0), rstan (≥ 2.21.1), StanHeaders (≥ 2.21.0-5)
Suggests:	countrycode, dplyr, EpiSoon, forecastHybrid, here, kableExtra, knitr, magrittr, rmarkdown, rnaturalearth, rstantools, spelling, tidyr, testthat, covr
Published:	2020-12-14
Author:	Sam Abbott [aut, cre], Joel Hellewell [aut], Katharine Sherratt [aut], Katelyn Gostic [aut], Joe Hickson [aut], Hamada S. Badr [aut], Michael DeWitt [aut], Robin Thompson [aut], Sophie Meakin [ctb], James Munday [ctb], Nikos Bosse [ctb], Paul Mee [ctb], Peter Ellis [ctb], EpiForecasts [aut], Sebastian Funk [aut]
Maintainer:	Sam Abbott <sam.abbott at lshtm.ac.uk>
BugReports:	https://github.com/epiforecasts/EpiNow2/issues
License:	MIT + file LICENSE
URL:	https:/epiforecasts.io/EpiNow2/, https:/epiforecasts.io/EpiNow2/dev/, https://github.com/epiforecasts/EpiNow2
NeedsCompilation:	yes
Language:	en-GB
Citation:	EpiNow2 citation info
Materials:	README NEWS
CRAN checks:	EpiNow2 results

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