biocompute: Create and Manipulate BioCompute Objects

Tools to create, validate, and export BioCompute Objects described in King et al. (2019) <doi:10.17605/>. Users can encode information in data frames, and compose BioCompute Objects from the domains defined by the standard. A checksum validator and a JSON schema validator are provided. This package also supports exporting BioCompute Objects as JSON, PDF, HTML, or 'Word' documents, and exporting to cloud-based platforms.

Version: 1.0.4
Imports: methods, jsonlite, yaml, digest, uuid, jsonvalidate, httr, curl, crayon, cli, stringr, magrittr, rmarkdown
Suggests: knitr
Published: 2020-10-16
Author: Soner Koc [aut, cre], Nan Xiao [aut], Dennis Dean ORCID iD [aut], Seven Bridges Genomics [cph, fnd]
Maintainer: Soner Koc <soner.koc at>
License: AGPL-3
NeedsCompilation: no
Materials: README NEWS
CRAN checks: biocompute results


Reference manual: biocompute.pdf
Vignettes: Authoring Biocompute Objects with R: A Case Study
An Introduction to BioCompute Objects with R
Package source: biocompute_1.0.4.tar.gz
Windows binaries: r-devel:, r-release:, r-oldrel:
macOS binaries: r-release: biocompute_1.0.4.tgz, r-oldrel: biocompute_1.0.4.tgz
Old sources: biocompute archive


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