[aut, cre, cph]Classes and functions to work with biological sequences (DNA, RNA and amino acid sequences). Implements S3 infrastructure to work with biological sequences as described in Keck (2020) <doi:10.1111/2041-210X.13490>. Provides a collection of functions to perform biological conversion among classes (transcription, translation) and basic operations on sequences (detection, selection and replacement based on positions or patterns). The package also provides functions to import and export sequences from and to other package formats.
| Version: | 0.1.2 |
| Depends: | R (≥ 3.1.0) |
| Imports: | methods, vctrs, tibble, ape, crayon, dplyr, pillar, stringr, readr, rlang |
| Suggests: | knitr, rmarkdown, testthat (≥ 2.1.0), covr |
| Published: | 2020-11-26 |
| Author: | Francois Keck
[aut, cre, cph] |
| Maintainer: | Francois Keck <francois.keck at gmail.com> |
| BugReports: | https://github.com/fkeck/bioseq/issues |
| License: | GPL-3 |
| URL: | https://fkeck.github.io/bioseq/ |
| NeedsCompilation: | no |
| Citation: | bioseq citation info |
| Materials: | README NEWS |
| CRAN checks: | bioseq results |
| Reference manual: | bioseq.pdf |
| Vignettes: |
Introduction to the 'bioseq' package Reference database preparation with the 'bioseq' package |
| Package source: | bioseq_0.1.2.tar.gz |
| Windows binaries: | r-devel: bioseq_0.1.2.zip, r-release: bioseq_0.1.2.zip, r-oldrel: bioseq_0.1.2.zip |
| macOS binaries: | r-release: bioseq_0.1.2.tgz, r-oldrel: bioseq_0.1.2.tgz |
| Old sources: | bioseq archive |
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