Creates 'graphs' of species associations (interactions) and ordination biplots from co-occurrence data by fitting discrete gaussian copula graphical models. Methods described in Popovic, GC., Hui, FKC., Warton, DI., (2018) <doi:10.1016/j.jmva.2017.12.002>.
| Version: | 1.0.1 |
| Depends: | R (≥ 3.5.0) |
| Imports: | mvabund, glasso, plyr, sna, MASS, tweedie, igraph, betareg, doParallel, mgcv, glm2, ordinal, compiler, foreach, stats |
| Suggests: | knitr, rmarkdown, testthat, tidyr, ggplot2, RColorBrewer, ggraph, labdsv, tidygraph |
| Published: | 2020-11-10 |
| Author: | Gordana Popovic [aut, cre], Michelle Lim [ctb], Francis K.C. Hui [ctb] |
| Maintainer: | Gordana Popovic <g.popovic at unsw.edu.au> |
| License: | LGPL-2.1 | LGPL-3 [expanded from: LGPL (≥ 2.1)] |
| NeedsCompilation: | no |
| Citation: | ecoCopula citation info |
| Materials: | README |
| CRAN checks: | ecoCopula results |
| Reference manual: | ecoCopula.pdf |
| Vignettes: |
the_basics |
| Package source: | ecoCopula_1.0.1.tar.gz |
| Windows binaries: | r-devel: ecoCopula_1.0.1.zip, r-release: ecoCopula_1.0.1.zip, r-oldrel: ecoCopula_1.0.1.zip |
| macOS binaries: | r-release: ecoCopula_1.0.1.tgz, r-oldrel: ecoCopula_1.0.1.tgz |
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