msigdbr: MSigDB Gene Sets for Multiple Organisms in a Tidy Data Format

Provides the 'Molecular Signatures Database' (MSigDB) gene sets typically used with the 'Gene Set Enrichment Analysis' (GSEA) software (Subramanian et al. 2005 <doi:10.1073/pnas.0506580102>, Liberzon et al. 2015 <doi:10.1016/j.cels.2015.12.004>) in a standard R data frame with key-value pairs. The package includes the original human gene symbols and NCBI/Entrez IDs as well as the equivalents for frequently studied model organisms such as mouse, rat, pig, fly, and yeast.

Version: 7.2.1
Depends: R (≥ 3.3.0)
Imports: magrittr, rlang, dplyr (≥ 0.7.0), tibble, tidyselect
Suggests: testthat, knitr, rmarkdown
Published: 2020-10-02
Author: Igor Dolgalev [aut, cre]
Maintainer: Igor Dolgalev <igor.dolgalev at nyumc.org>
BugReports: https://github.com/igordot/msigdbr/issues
License: MIT + file LICENSE
URL: https://igordot.github.io/msigdbr, https://github.com/igordot/msigdbr
NeedsCompilation: no
Materials: README NEWS
CRAN checks: msigdbr results

Downloads:

Reference manual: msigdbr.pdf
Vignettes: Introduction to msigdbr
Package source: msigdbr_7.2.1.tar.gz
Windows binaries: r-devel: msigdbr_7.2.1.zip, r-release: msigdbr_7.2.1.zip, r-oldrel: msigdbr_7.2.1.zip
macOS binaries: r-release: msigdbr_7.2.1.tgz, r-oldrel: msigdbr_7.2.1.tgz
Old sources: msigdbr archive

Reverse dependencies:

Reverse depends: GSDA
Reverse imports: AutoPipe, ChromSCape, escape, hypeR, netgsa, pathfindR, RVA, scTGIF, singleCellTK
Reverse suggests: EnrichmentBrowser, MAGeCKFlute, simplifyEnrichment, tidybulk

Linking:

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