Estimate cell-type-specific gene expression profiles and sample-specific cell-type proportions simultaneously using bulk sequencing data. Kang et al. (2019) <doi:10.1371/journal.pcbi.1007510>.
| Version: | 1.0.8 |
| Depends: | R (≥ 3.6.0) |
| Imports: | Rcpp (≥ 1.0.3), MASS, foreach, doParallel, dirmult, RcppThread, iterators, parallel, qlcMatrix, gplots, grDevices, clue, Biobase, Seurat, ggplot2, magrittr, dplyr, rlang, Matrix, matrixStats, ggpubr |
| LinkingTo: | Rcpp, RcppArmadillo |
| Suggests: | knitr, rmarkdown, testthat (≥ 3.0.0) |
| Published: | 2021-02-10 |
| Author: | Kai Kang [aut, cre, cph], Caizhi Huang [aut], Qian Meng [ctb], Igor Shats [ctb], Melissa Li [ctb], David Umbach [ctb], Leping Li [aut, cph], Yuanyuan Li [ctb], Xiaoling Li [ctb] |
| Maintainer: | Kai Kang <kangkai0714 at gmail.com> |
| BugReports: | https://github.com/kkang7/CDSeq_R_Package/issues |
| License: | GPL-3 |
| URL: | https://github.com/kkang7/CDSeq_R_Package, https://doi.org/10.1371/journal.pcbi.1007510 |
| NeedsCompilation: | yes |
| Citation: | CDSeq citation info |
| Materials: | README NEWS |
| CRAN checks: | CDSeq results |
| Reference manual: | CDSeq.pdf |
| Vignettes: |
CDSeq: a complete deconvolution method using sequencing data |
| Package source: | CDSeq_1.0.8.tar.gz |
| Windows binaries: | r-devel: CDSeq_1.0.8.zip, r-release: CDSeq_1.0.8.zip, r-oldrel: CDSeq_1.0.8.zip |
| macOS binaries: | r-release: CDSeq_1.0.8.tgz, r-oldrel: CDSeq_1.0.8.tgz |
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